RNA id: XR_003404024.2


Basic Information

Item Value
RNA id XR_003404024.2
length 2220
lncRNA type inter_gene
GC content 0.37
exon number 5
gene id LOC113540370
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10024585 ~ 10096068 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAGCTGAaggaatataaatatttaaaacagtttaCTGAAATCATTATACATGCAGTGGAATACCATGGAAGCAGAAGAGCTGGCTCAAACACCGTATTAGCTGACACGTGAGTCAGACAGTGAGATTTCCTGAAACAGCGAGTTAGTGTGAAATGTGACAACTGATGCTGTCAGCAATGAACCTCTTTACATATGCACTATGTGAGTATGTGTAAGGCAGAACAGGTGAGGACCAGGCTGAAATCTCTCCATCTTCACAATTCTATGATCAGAGATTTCCCTTGGCACAGTTTCTGTACACCGACATCGGGGCTGTATTAGAAGTCCTGTTGTATTAAAGAGGAAGACAGATGTGATCAATGGAAAAGCAGAGACATATTTCTAAAATCCCATACacgctttgtaagctctttgaaGACCGTGCCTTCGGCagtcagatgagacaaagaaatgtcaagaaaatcctacagaaactgcggaagagaaaagggagaaaatgcTGGCTTCTTGCCAAGTTCAAATCCAGGATACCTCATATACCAAACACATGCGTCATTGTTCATCTGGGAACTCTGTGAGggaaAGACCTTAGTGTGTCATTCATGAAGAATTTCTGCTTTTCAGAGGAAGATCTGATTATCTTTTATAAGAACTGACATAGTctgtggagtcactgttactgtaatcattggcagaGGTTCAGAGCTGTCAGAACCTGTGCCAAAATGGTTCCAGTAGAACATGTTAATGTCTGTTGGAAATTCCTGAGAAACAAAATGAGGACCAGGTTGAAAAATCTCCAGCTTCACAATTCTATGATCAGAGATTTCCTTTGCCACTGTGTCTGTACACTGACATCGGTGATACAGGGCCGGAACTCCTGCAGAGGAAGAGAAATGTGATCAGTGCACAACTTCTCTGATGAAAATATGAATagtcttggttttttttttttaatgcctaaAAAAATTCTTGGAAAagaacaatttattttattgcactCATGAGCAAGATGTTCTTAGTAACTTCCTGTGTGCAAGTTGCCTCTTTAATGAAATACACCTAAAAGCATGAATTGATATAGCTTCTTAAGAAACCAGTAATATAGCCAACTCTATAAAGAAAAGTAAATATTCAACAAAATGTACTTACCTTCTGTCATTGCCAAGAGAGCACAGGTTAAAACAGTGATAGCTAGAGCTGAagacttcattattttttttaattaaagaaattcaGGAGACCACTTGTGTCAAGTGCTGCAGAGTTCTCAGCTAAGAAACTGAGCTTAGGGCCCTTTTATAGTCCTTCGGCTtccaatgaaaatgaaagattgCATAACAGACATTCTCCCCATGAAATTCAGTGCTCTTCCAGCGAAGTGATCGCtatttgaagtgaagtgaagtgaattaTTTACGTAATATGCTACTTCCTTTACTGATATACaaccatttttctgtaacattaaattttAGTTagaaagtaatgtttggaaatataaagcTTTTTACTGACTGAGTAATGCATAAGTCATAAGGAGTAAGAGAAAGGCTTGGAGCGCTGGCTTCTTGACATGTTATTACGTTATCAAACTCAGGAAGTCACAAACCAAATACACACGTTATTGTTCATCTGGGAATGCTGGGAGGTGAGTGGATGCACATGAAAGTGAAAATACCTCTTAAAATGTAAACTTTCTGAGtagtgagggagagaggaaaagatcAGGGTGGCTAGTAAACATAATGGTTTGAATCAGATTCCAAAATCAGTGAGATCCAATAATGCTGCACAAACCCACCATTTTCTCTCAGACTCTTACCAATGCAATATTTGTGACTAATTCACAATGTTGTCCGTTAGCATATAACCTATTCAGATTATTTatcttgtattttttgtatgtaaaaaaataaagtgaacaAATTATATCACAGAGAAAACTcttacatttattaatcttgTGTATACATAAGGAACAAAAACCTCCAACAACTAAATATTGGCAACTAAAGATTGTTTTTACTGTCCTAATGTGAAactgtatttataattatgacCCTAGTAAAATGTACAATGCATGATAATGTGATAATTgcataatatgatatgatatgataataatTCCATATAGGCTTTGAAGGTTTTACCggtgaataaacacaaataaattgttGGCTGAACACACTGAAACCTACTTCAGTGAAACACTCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73125 lncRNA upstream 24824 10046592 ~ 10047551 (+) True G61735
TU73126 lncRNA upstream 30616 10024585 ~ 10041759 (+) False LOC113540370
TU73129 lncRNA upstream 30616 10024585 ~ 10041759 (+) True LOC113540370
TU73068 lncRNA upstream 103475 9881068 ~ 9968900 (+) True G61689
TU73179 lncRNA downstream 69461 10165529 ~ 10297564 (+) True G61785
TU73180 lncRNA downstream 128054 10224122 ~ 10266279 (+) False G61786
XR_004577941.1 lncRNA downstream 193806 10289874 ~ 10290684 (+) True LOC117596987
TU73244 lncRNA downstream 261746 10357814 ~ 10358964 (+) True G61842
TU73272 lncRNA downstream 378700 10474768 ~ 10486042 (+) True trnak-cuu_13
XM_026936955.2 mRNA upstream 75327 9992956 ~ 9997048 (+) True ino80b
XM_026936956.2 mRNA upstream 75327 9992956 ~ 9997048 (+) False ino80b
XM_034303761.1 mRNA upstream 105543 9940656 ~ 9966832 (+) False clcn3
XM_034303828.1 mRNA downstream 127714 10223782 ~ 10224603 (+) True LOC117597106
XM_034303251.1 mRNA downstream 140684 10236752 ~ 10266758 (+) False LOC113538341
XM_034303250.1 mRNA downstream 152469 10248537 ~ 10266758 (+) True LOC113538341
XM_034303830.1 mRNA downstream 174775 10270843 ~ 10280812 (+) True LOC117597107
XM_026936741.2 mRNA downstream 266922 10362990 ~ 10370654 (+) True LOC113540310
trnas-gcu other upstream 159897 9912397 ~ 9912478 (+) True trnas-gcu
XR_004578013.1 other upstream 191149 9860894 ~ 9881226 (+) False si:ch211-168d1.3
XR_004578014.1 other upstream 191149 9860894 ~ 9881226 (+) False si:ch211-168d1.3
XR_003403991.2 other upstream 240095 9807321 ~ 9832280 (+) False gal3st3
XR_004578067.1 other upstream 298326 9758460 ~ 9774049 (+) False rbm14b
TU73183 other downstream 71778 10167846 ~ 10266279 (+) True G61786
trnak-cuu_4 other downstream 378550 10474618 ~ 10474690 (+) True trnak-cuu_4
trnak-cuu_5 other downstream 379789 10475857 ~ 10475929 (+) True trnak-cuu_5
trnak-cuu_6 other downstream 381021 10477089 ~ 10477162 (+) True trnak-cuu_6
trnak-cuu_7 other downstream 382234 10478302 ~ 10478374 (+) True trnak-cuu_7

Expression Profile