RNA id: TU73272


Basic Information

Item Value
RNA id TU73272
length 1446
lncRNA type sense_over
GC content 0.62
exon number 2
gene id trnak-cuu_13
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10474768 ~ 10486042 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTGCTCGGTCGGCTTGCGCTCAATCTCAGGTCCCTGGGTTTGAGCCCCGTgctgggtggtggtggtgttggctGGTGCCCTGAGACTGCGTGAGTTCGGAACGGTCTTGGTAGGCGCCCTTCCAGCTGGCAGCAACAGCCGTGTGGTCCTCAGTCCAGCGCCCCGCTTTTGCGAGGCGCCCACGGTCGCGTTGGCTCGAACCCCACGATGGGCAGGGAGTTTTTGTTCGAGGTCGTCTCCGGGGGCGCCTTTCCGAGGCGCATCGCCCATCGGGCTGCGGTTCGGCTGGGCTGCTGGCCTCCCTGTTGCGCGTGAGGCGCTTAATCACGGGGTCCTGGGTTCGAGCCAGCCCCATGAAGGGTCAGGAGCGTTATTGCGGGGGGCTCCTTGAGACGGCAAGAGTTCAATGTCGTCCAGCCCCATGGAGAGGGGAGGCGCGTTTTCGCGGGAACCCTCAGCTGCTCGTTCCTCTTTTTGCCTTCTGATTGCCTTCTTCTGACAATTTCAATATGATTCCACAGTTTTGCTTTCAAATCTGCTTCAACTCTCCAATCTCGACACACGAGCTCGGCTGCCAGATTAATTAGGGAGTGATTACTGGGGTTGTTGCGTCAGCTGGTCCGGCGCTTAATCACATGGTCCGGGGTTCGAGACAGCCCCGTGCAGGGGGAGGAGCGTTTTTGGGGGGGCGCCCTGAGAGTGTGCGCTGGTTCAAAAGGCTCTTGCCAAGACGCACCGCCCTTGCAGCAACAGCCGCTCGCTCCTCTGTTGGCCTCCTCGTTCCTCCGTTTGCCTTCCGCTCAAGCTCGTCAGGGGCGTGGTGGTTCTGGATGTCTAACAAAGGCTGCCGCTGCGTCCCTGGGTGGGCTCGAACCACCAACCTTTCGGTTAACAGCCGAACGCGCTAGCCTATTGCGCCCGTGCCGGGCTTGCTGGCTTTCCCGCTCGCCGCTCGGAAAAACCGTGCGTGCCCTGTTGGGCCGAAAACCAGCCGCGGGGTGCCGGGACATGTTTTGTGCCAGGCCCCTGTGCCAGTGCTTTCTTCAGAGAGGGCGTGGGCAGGCAGCCGACGTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGCGGAGTGTTTTTTGCGGGGGCGCCCCGAGACGGCAAGAGTTCAACGTTGTCCCTGGAGGCCCCCGCCGATTCCGCCCCTGCTCGGTCGGCTTGCGCTCAATCTCAGGTCCCTGGGTTTGAGCCCCGTgctgggtggtggtggtgttggctGGTGCCCTGAGACTGCGTGAGTTCGGAACGGTCTTGGTAGGCGCCCTTCCAGCTGGCAGCAACAGCCGTGTGGTCCTCAGTCCAGCGTCCCGTTTTTGCGAGACGTCCACGGTCGTTGGCTCGAACCCCACGATGGGCAGGGAGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73244 lncRNA upstream 115804 10357814 ~ 10358964 (+) True G61842
TU73179 lncRNA upstream 177204 10165529 ~ 10297564 (+) True G61785
XR_004577941.1 lncRNA upstream 184084 10289874 ~ 10290684 (+) True LOC117596987
TU73180 lncRNA upstream 208489 10224122 ~ 10266279 (+) False G61786
XR_004577930.1 lncRNA upstream 378700 10072375 ~ 10096068 (+) False LOC113540370
TU73615 lncRNA downstream 11088 10497130 ~ 10497360 (+) True G62131
XR_004577940.1 lncRNA downstream 13233 10499275 ~ 10506477 (+) True LOC117596986
TU73717 lncRNA downstream 171810 10657852 ~ 10663407 (+) False c4h4orf48
XR_004577939.1 lncRNA downstream 329708 10815750 ~ 10816552 (+) True LOC117596985
TU73906 lncRNA downstream 378613 10864655 ~ 10864861 (+) True G62373
XM_026936782.2 mRNA upstream 78032 10392375 ~ 10396736 (+) True si:ch211-1o7.2
XM_026936741.2 mRNA upstream 104114 10362990 ~ 10370654 (+) True LOC113540310
XM_034303830.1 mRNA upstream 193956 10270843 ~ 10280812 (+) True LOC117597107
XM_034303251.1 mRNA upstream 208010 10236752 ~ 10266758 (+) False LOC113538341
XM_034303250.1 mRNA upstream 208010 10248537 ~ 10266758 (+) True LOC113538341
XM_026936783.2 mRNA downstream 76190 10562232 ~ 10569484 (+) True rgp1
XM_034303266.1 mRNA downstream 76190 10562232 ~ 10569484 (+) False rgp1
XM_034303267.1 mRNA downstream 76606 10562648 ~ 10569484 (+) False rgp1
XM_026936745.2 mRNA downstream 88881 10574923 ~ 10595122 (+) True pik3c3
XM_034303242.1 mRNA downstream 149663 10635705 ~ 10644751 (+) True faah2b
trnak-cuu_4 other upstream 78 10474618 ~ 10474690 (+) True trnak-cuu_4
TU73183 other upstream 208489 10167846 ~ 10266279 (+) True G61786
trnas-gcu other upstream 562290 9912397 ~ 9912478 (+) True trnas-gcu
XR_004578013.1 other upstream 593542 9860894 ~ 9881226 (+) False si:ch211-168d1.3
XR_004578014.1 other upstream 593542 9860894 ~ 9881226 (+) False si:ch211-168d1.3
trnak-cuu_14 other downstream 860 10486902 ~ 10486974 (+) True trnak-cuu_14
trnak-cuu_15 other downstream 2098 10488140 ~ 10488212 (+) True trnak-cuu_15
trnak-cuu_16 other downstream 3323 10489365 ~ 10489436 (+) True trnak-cuu_16
trnak-cuu_17 other downstream 4536 10490578 ~ 10490650 (+) True trnak-cuu_17
trnak-cuu_18 other downstream 5755 10491797 ~ 10491869 (+) True trnak-cuu_18

Expression Profile