RNA id: trnak-cuu_13


Basic Information

Item Value
RNA id trnak-cuu_13
length 73
RNA type tRNA
GC content 0.62
exon number 1
gene id trnak-cuu_13
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10474768 ~ 10486042 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73244 lncRNA upstream 126708 10357814 ~ 10358964 (+) True G61842
TU73179 lncRNA upstream 188108 10165529 ~ 10297564 (+) True G61785
XR_004577941.1 lncRNA upstream 194988 10289874 ~ 10290684 (+) True LOC117596987
TU73180 lncRNA upstream 219393 10224122 ~ 10266279 (+) False G61786
XR_003404024.2 lncRNA upstream 389604 10072375 ~ 10096068 (+) False LOC113540370
TU73615 lncRNA downstream 11386 10497130 ~ 10497360 (+) True G62131
XR_004577940.1 lncRNA downstream 13531 10499275 ~ 10506477 (+) True LOC117596986
TU73717 lncRNA downstream 172108 10657852 ~ 10663407 (+) False c4h4orf48
XR_004577939.1 lncRNA downstream 330006 10815750 ~ 10816552 (+) True LOC117596985
TU73906 lncRNA downstream 378911 10864655 ~ 10864861 (+) True G62373
XM_034303831.1 mRNA upstream 1525 10482489 ~ 10484147 (+) True LOC117597108
XM_026936782.2 mRNA upstream 88936 10392375 ~ 10396736 (+) True si:ch211-1o7.2
XM_026936741.2 mRNA upstream 115018 10362990 ~ 10370654 (+) True LOC113540310
XM_034303830.1 mRNA upstream 204860 10270843 ~ 10280812 (+) True LOC117597107
XM_034303250.1 mRNA upstream 218914 10248537 ~ 10266758 (+) True LOC113538341
XM_026936783.2 mRNA downstream 76488 10562232 ~ 10569484 (+) True rgp1
XM_034303266.1 mRNA downstream 76488 10562232 ~ 10569484 (+) False rgp1
XM_034303267.1 mRNA downstream 76904 10562648 ~ 10569484 (+) False rgp1
XM_026936745.2 mRNA downstream 89179 10574923 ~ 10595122 (+) True pik3c3
XM_034303242.1 mRNA downstream 149961 10635705 ~ 10644751 (+) True faah2b
trnak-cuu_12 other upstream 1155 10484444 ~ 10484517 (+) True trnak-cuu_12
trnak-cuu_11 other upstream 2386 10483214 ~ 10483286 (+) True trnak-cuu_11
trnak-cuu_10 other upstream 3618 10481982 ~ 10482054 (+) True trnak-cuu_10
trnak-cuu_9 other upstream 4853 10480747 ~ 10480819 (+) True trnak-cuu_9
trnak-cuu_8 other upstream 6072 10479529 ~ 10479600 (+) True trnak-cuu_8
trnak-cuu_14 other downstream 1158 10486902 ~ 10486974 (+) True trnak-cuu_14
trnak-cuu_15 other downstream 2396 10488140 ~ 10488212 (+) True trnak-cuu_15
trnak-cuu_16 other downstream 3621 10489365 ~ 10489436 (+) True trnak-cuu_16
trnak-cuu_17 other downstream 4834 10490578 ~ 10490650 (+) True trnak-cuu_17
trnak-cuu_18 other downstream 6053 10491797 ~ 10491869 (+) True trnak-cuu_18