RNA id: TU73340


Basic Information

Item Value
RNA id TU73340
length 1970
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G61900
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9605727 ~ 10041766 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGGGATCATTTCTATAGTCTCTAACTaggaaatgtgatttgaaaGCGTTACGTCTCTCTAATCACGATGATGAGTTTTGATGTATTTCTCTGAGCGTGAATCGGATTTTAGCTAGTGATTTTATCATGAGCTTTAGTCATTGATGAACGTTCTCTGTTTCTTATGGAACATGAGAGGAGAAGTACATGATCAGAGTGATTAGTGATTTGGTTGTTCAAAAACAGAGCTGTTGGTGTGGGCTGTTATTTTGAAtctaaatgtttgtttatacGTTTAATGAGTTTCAAAGTTGATGTTTTAAAAACTTAGgacatgtaaaatgttttttgcagTTTAGAGAGTTTTATTGATGTGTAATTTTTTGTGTAGTGTTAATATTAGTATGCTTATGAATAGTCTGAAATATTGCttgtttaatgtgaaataaagtggAGATCTGAGAAAAGAAGTACATGATCAGAGTGATTAGTGGTTTCTTTGTGTGAAaagcagagggttttttttaaggttGTTACTGGTTGGTGTTGATAAACTTCATATAGGTTTGGTGAATGCCTAGTTATGGTGgcttttatgatttatttgtctGTAATTTGGTAAGTGAATAAGTAAACTGGGTGTTACAATTCCTGCTTAATTCgcagggtgttttttttaatgatagtATTAAATGCGTATGTTTATGAATAGCTTGAAGCATTGCATTTTCTAAGTGAGATAAAATTTAGACTTGCCAGCTTTATGGCTCTTATTTCTAAGTAGGAAACACATTTTGAGAGTGTTGTGTCTCAGTAACCACGCTACTCATCTCATGACTCATTCTCCACTTCTGAGAAAGTTACAGCAAGTGATTTCTATAGGACCCTCAGCAGGAGGGGGGTGTGCGTATGGCTATAAAACAAAGcaattttctgcttttattcaATATGAATTCAAGCCTTCTTTGTTTTTACAATATAGATGTGGATAGCTGTTCATTttcgtgtgtgttgtgtgtagaatCATAAATCTGCCATCTTCAAGATCTGTGTGATATTTGAAGTGCTCGAGTGTCTGAGGATGTGAGAGGTTAAGACTATACTTTCAGGGATCATTTCTATAGTTTCTAACTaggaaatgtgatttgaaaGCGTTATGTCTCTCTAATCACAATGATGAGCTTTGATGTATTTCTCTGAGCGTGAATCGGATTTTAGCTAGTGATTTTGTCATGAGCTTTAATCATTGATGAATGTTCTCTGTTTCTTATGGAACATGAGAGGAGAAGTACATGGTCAGAGTGATTAGTGGCTTCTTTGTTTGAAAGCAGAAGAATTGGTGTAGATTATGAAGTTGGTTATTATTTTGTGAGTAAGTGGTTTTTGGGTGTTCTTGTATGTGTAATGGTTTTCAGAGTTGATGCTTTAAAGGTTTagtaaatacaaaatgttttttgctgtttggggGGTTTGCCGATGATTATTTTTTTGAGTAGTGTTAATATTAGTATGCTTATGAATAGTCTGAAATATGGCTTGTTCAATGTGAAATAAAGTGGAGATCTGAGAGGAGAAGTACATGATCAGAGTGATTAGTGGTTTCATTGTGTGAAaagcagagggttttttttaaggctGTTACTGGTTGGTGTTGATAAACTTCATATAGGTTTGGTGAATGCCTAGTTATGGTGgcttttatgatttatttgtctgtaatttggtaagtgaataaataaactggGTGTTACAATTCCTGCTTAATTCACAgggttatttttcttttttggtagTATTAAATGCGTATGTTTATGAATAGCTTGAAGCATTACGTTTtctaagtgaaataaaatttagACTTGCCAGTGTTACAGCTCTTATTTCTAAGTAGGAAACACATTTTGAGAGTGTTGTGTATCAGTAACCACACTACTCATCTCATGACTCATTCTCCACTTGTAGAAAAAAGTTGATACTTCTTCAACTGAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404094.1 lncRNA downstream 210 10038554 ~ 10038766 (-) True LOC113540720
XR_004577932.1 lncRNA downstream 993 10026874 ~ 10037983 (-) True LOC117596979
XR_004577931.1 lncRNA downstream 994 10030877 ~ 10037982 (-) False LOC117596979
XR_004578128.1 lncRNA downstream 1619 10037145 ~ 10037357 (-) True LOC117597222
TU73502 lncRNA downstream 6556 10027513 ~ 10032420 (-) False LOC117596979
TU73473 lncRNA upstream 28640 10070406 ~ 10073193 (-) True cxcl19
TU73517 lncRNA upstream 37161 10078927 ~ 10080217 (-) False LOC113540372
XR_004577927.1 lncRNA upstream 160465 10202231 ~ 10211232 (-) True LOC113540369
TU73581 lncRNA upstream 322246 10364012 ~ 10364892 (-) True G62108
TU73582 lncRNA upstream 326555 10368321 ~ 10370563 (-) True G62109
XM_034303217.1 mRNA downstream 15199 9997315 ~ 10023777 (-) False intu
XM_034303216.1 mRNA downstream 15201 9997315 ~ 10023775 (-) False intu
XM_034303215.1 mRNA downstream 17512 9997315 ~ 10021464 (-) False intu
XM_034303214.1 mRNA downstream 17512 9997315 ~ 10021464 (-) True intu
XM_034303262.1 mRNA downstream 46109 9980997 ~ 9992867 (-) False aadat
XM_034303271.1 mRNA upstream 4806 10046572 ~ 10053214 (-) False trmt10b
XM_034303270.1 mRNA upstream 4806 10046572 ~ 10053214 (-) False trmt10b
XM_026936792.2 mRNA upstream 4806 10046572 ~ 10053214 (-) True trmt10b
XM_026936815.2 mRNA upstream 29050 10070816 ~ 10073229 (-) False cxcl19
XM_034303281.1 mRNA upstream 36922 10078688 ~ 10080237 (-) True LOC113540372
TU73337 other downstream 1401 10027987 ~ 10037575 (-) False G61900
TU73432 other downstream 233658 9776278 ~ 9805318 (-) True G61972
TU73323 other downstream 510173 9526574 ~ 9528803 (-) False LOC113526752
TU72884 other downstream 700231 9337826 ~ 9338745 (-) True G61537
XR_003403995.2 other downstream 711545 9314849 ~ 9327431 (-) False LOC113540087
trnan-guu other upstream 432630 10474396 ~ 10474470 (-) True trnan-guu
trnan-guu_1 other upstream 433857 10475623 ~ 10475696 (-) True trnan-guu_1
trnan-guu_2 other upstream 435092 10476858 ~ 10476930 (-) True trnan-guu_2
trnan-guu_3 other upstream 437533 10479299 ~ 10479372 (-) True trnan-guu_3
trnan-guu_4 other upstream 438751 10480517 ~ 10480591 (-) True trnan-guu_4

Expression Profile