RNA id: TU73422


Basic Information

Item Value
RNA id TU73422
length 740
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G61967
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9750821 ~ 9752285 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tatatatatatatattcttaattCGATCTACAGTTACTTATCAATCCCTttatgtgtgtttcagtggcATAAACACTTCATCTCTGTCAGTTCATTAAACTTACTATAACCAGagtcaaatataaaacatgccgcttctcacattcacattctcATCTGTAAGgtgaaaggtcagaggtcaccgTACCTCATGCAGTCCTGTGTGAGGTCTCCGAATTCATGAACGTGAAGACCATGAGGCCCGGGCTCTAAGCCGTCAATCGTGCCGTCAATCAAACAACGATCCTCGGATAGCTGCAGAAACCGGACCACGCCCTGCACTAGCCCCGCCCCACTCAGCATAGCCACGGCCGCTCCCAGATCTGaagcattcacacacaaacagattatTACTGAACCAACATTAGTGACTCTACTCTGACTCTACTCACACTCCCTCTCTACTCTGACTCTACTCACGCTCCCTCTACTCTGACTCTACTCACGCTCCCTCTACTCTGACTCTACTCACGCTCCCTCTCTATTCTGACTCTACTCACGCTCCCTCTACTCTGACTCTACTCACGCTCCCTCTCTACTCTGACTCTACTCACGCTCCCTCTACTCTGACTCTACTCACGCTCCCTCTCTACTCTGACTCTACTCACGCTACCTCTCTATTCTGACTCTACTCACGCTCCCTCTATATTCTGACTCTACTCACGCTCCCTCTATATTCTGACTCTACTCACGCTCCCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73388 lncRNA downstream 26869 9684030 ~ 9723952 (-) True G61934
TU73387 lncRNA downstream 26869 9694664 ~ 9723952 (-) False G61934
XR_003404080.2 lncRNA downstream 129902 9620713 ~ 9620919 (-) True LOC113540706
XR_003404089.2 lncRNA downstream 130395 9620215 ~ 9620426 (-) True LOC113540715
XR_004578138.1 lncRNA downstream 134614 9615995 ~ 9616207 (-) True LOC117597230
TU73489 lncRNA upstream 175048 9927333 ~ 9939105 (-) True G62023
TU73477 lncRNA upstream 242326 9994611 ~ 9995711 (-) True G62012
TU73344 lncRNA upstream 272413 10024698 ~ 10041766 (-) True G61900
XR_004578124.1 lncRNA upstream 274054 10026339 ~ 10026551 (-) True LOC117597218
XR_004577932.1 lncRNA upstream 274589 10026874 ~ 10037983 (-) True LOC117596979
XM_034303884.1 mRNA downstream 179357 9533997 ~ 9571464 (-) False capn1
XM_026935986.2 mRNA downstream 266220 9474178 ~ 9484601 (-) True LOC113539885
XM_026936422.2 mRNA upstream 130426 9882711 ~ 9889757 (-) True zgc:101810
XM_034303449.1 mRNA upstream 140066 9892351 ~ 9896258 (-) False six7
XM_026937032.2 mRNA upstream 140066 9892351 ~ 9896256 (-) True six7
XM_026935933.2 mRNA upstream 155274 9907559 ~ 9911772 (-) True b4gat1
XM_026937084.2 mRNA upstream 161949 9914234 ~ 9919791 (-) True pfdn2
TU73323 other downstream 222018 9526574 ~ 9528803 (-) False LOC113526752
TU72884 other downstream 412076 9337826 ~ 9338745 (-) True G61537
XR_003403995.2 other downstream 423390 9314849 ~ 9327431 (-) False LOC113540087
TU72820 other downstream 766368 8983234 ~ 8984453 (-) True G61478
XR_004578041.1 other downstream 1171971 8575506 ~ 8578850 (-) False LOC113526753
TU73432 other upstream 23993 9776278 ~ 9805318 (-) True G61972
TU73337 other upstream 275702 10027987 ~ 10037575 (-) False G61900
trnan-guu other upstream 722111 10474396 ~ 10474470 (-) True trnan-guu
trnan-guu_1 other upstream 723338 10475623 ~ 10475696 (-) True trnan-guu_1
trnan-guu_2 other upstream 724573 10476858 ~ 10476930 (-) True trnan-guu_2

Expression Profile