RNA id: XR_004577931.1


Basic Information

Item Value
RNA id XR_004577931.1
length 2075
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id LOC117596979
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10026874 ~ 10037983 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aataaaatataagcgACTCGACAGGAAAGAGGGGGTTTGTAGGAAACTTACTGCGTTTTTAGAGCAGACACATGACATCATGTGACCTTCTAAAGCAACCTTAGAACAAATAGCTATAAGTGAaatgactgtgtgtatataaatggagtgtgtgtgtgtgtgtgtttctttcttgaCTCCATAATGTCAGTTCAATGACAAATGGAGCAAGTGATCATCCATCAAGTGTCCGactacacctctctctctctctctctctctctttacattctctctctctcacccgtGTGATGACCGAGAAAAAACGACCCTAAAGCTATGTGTGTTCTTCCACCTGGCGTCTGATCGAGGAACTGCAGGAGCCTTTAACTGCGGAAGTAACTCAGCCCTGTGGGCGCAAAGCATGATGGgaatgttcattcattcgtaTAAAGAGcaattttctgcttttattcGAGATGAATTCATGTCAGTTTTCCAGTCATGTTTTTTGGATAGTCTGTGTAGATAGCTgttcatttgcatgtgtgttatgTGCAGAATCTAAATACGTACCAGAATACCTGCCATCTTCAGGATCTGTGTGATATTTGAAGTGCTCGAGTGTCTGAGGAAGTGAGAGGTTAAGACTATACTTTCAGGGATCATTTCTATAGTCTCTAACTaggaaatgtgatttgaaaGCGTTACGTCTCTCTAATCACGATGACGAGGTCTGATGTGCTTTTCTGAGCGTGAATCGGGTTGAAACTAATGATTCGTTCATGAGTTTTAATCATTGATGAACGTTCTTCATTTCTTAGGAAATGTAAGAGGAAGAGTACATGATCAGAGTGATTATTACTGAATTGTTAATGAAagaattattatgttttattttggttagaattgttatgttatgtttttaatGGTGGAAGTAGAAGTGTttttagtgtaatgtaatgaaatggtGTGAGAGGTATTAAGTAAAAACGCGGTAAGTTGTGTGAATCTGGTCATATACGCGAATAAACACTCCATAGGAAGAATTCATGCCAGAAATAAAACTAAGTACTCTATACGTgtgatgttaaaataaaataaaataaatatggagTCACGTAAAATTTGTTAATCAGCACAACAcgctgcaaaaaacaaaaagtgctcTCACCAAGCAGAAGACTGAGACTCAGAAAATGGACATCAGCAAGAGGAAAGACTCTTTAAACTGGAATCACGGCCTTTCATATGGATCTATGGATTGAAATCAGTTTAAGACTGAAGGAGTTTTGGAGTTTTTGGGTGGGAGGGTGGAGAGTCTGAGGgcttttaaaacatgtaaatatgcaaaactgCTGCATTAAAGGCATCTTCAAATGTATCaagaagtctctctctctcgctgtgcATGCTGGGAGTGTGGGGAATGTGAGCGTCTCACAGGTGTGTGCCCGACGCCGGCGCCACAGTGGAGGATGTACTCGTGCTTCCAGGATGAACAAAGCTATGGTGATCTTTCTGAAGGAGTGGAGTTTAGTCAGTCATTTGATTGAGAGCGGAGTTTGGctgtgtgtgttcttccaCCTGGCGTCTGATCGAGGAACTGCAGGATCCTTTAACTGCGGAAGTAACTCAGTCCTGTGGGCGCAAAGCATGATGGgaatgttcattcattcgtaTAAAGAGcaattttctgcttttattcGAGATGAATTCATGTCAGTTTTCCAGTCATGTTTTTTGGATAGTCTGTGTAGATAGCTgttcatttgcatgtgtgttatgTGCAGAATCTAAATACGTACCAGAATACCTGCCATCTTCAGCATCTGTGTGATATTTGAAGTGCTCGAGTGTCTGAGGAAGTGAGAGGTTAAGACTATACTTTCAGGGATCATTTCTATAGTCTCTAACTaggaaatgtgatttgaaaGTGTTACGTCTCTCTAATCACGATGACGAGGTCTGATGTGCTTTTCTGAGCGTGAATCGGGTTGAAACTAATGATTCGTTCATGAGTTTAAATCATTGATGAACGTTCTTCATTTCTTAGGAAATGTGAGAGGAAGAGTACATGATCAGAGTGATTGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578124.1 lncRNA downstream 4326 10026339 ~ 10026551 (-) True LOC117597218
TU73477 lncRNA downstream 35166 9994611 ~ 9995711 (-) True G62012
TU73489 lncRNA downstream 91772 9927333 ~ 9939105 (-) True G62023
TU73421 lncRNA downstream 278592 9750821 ~ 9752285 (-) True G61967
TU73422 lncRNA downstream 278592 9750821 ~ 9752285 (-) False G61967
XR_003404094.1 lncRNA upstream 572 10038554 ~ 10038766 (-) True LOC113540720
TU73334 lncRNA upstream 994 10038976 ~ 10041766 (-) False G61900
TU73338 lncRNA upstream 994 10038976 ~ 10041766 (-) False G61900
TU73340 lncRNA upstream 994 10038976 ~ 10041766 (-) False G61900
XR_003404083.2 lncRNA upstream 1398 10039380 ~ 10039587 (-) True LOC113540709
XM_034303217.1 mRNA downstream 7100 9997315 ~ 10023777 (-) False intu
XM_034303216.1 mRNA downstream 7102 9997315 ~ 10023775 (-) False intu
XM_034303215.1 mRNA downstream 9413 9997315 ~ 10021464 (-) False intu
XM_034303214.1 mRNA downstream 9413 9997315 ~ 10021464 (-) True intu
XM_034303262.1 mRNA downstream 38010 9980997 ~ 9992867 (-) False aadat
XM_034303271.1 mRNA upstream 8590 10046572 ~ 10053214 (-) False trmt10b
XM_034303270.1 mRNA upstream 8590 10046572 ~ 10053214 (-) False trmt10b
XM_026936792.2 mRNA upstream 8590 10046572 ~ 10053214 (-) True trmt10b
XM_026936815.2 mRNA upstream 32834 10070816 ~ 10073229 (-) False cxcl19
XM_034303281.1 mRNA upstream 40706 10078688 ~ 10080237 (-) True LOC113540372
TU73432 other downstream 225559 9776278 ~ 9805318 (-) True G61972
TU73323 other downstream 502074 9526574 ~ 9528803 (-) False LOC113526752
TU72884 other downstream 692132 9337826 ~ 9338745 (-) True G61537
XR_003403995.2 other downstream 703446 9314849 ~ 9327431 (-) False LOC113540087
TU72820 other downstream 1046424 8983234 ~ 8984453 (-) True G61478
trnan-guu other upstream 436414 10474396 ~ 10474470 (-) True trnan-guu
trnan-guu_1 other upstream 437641 10475623 ~ 10475696 (-) True trnan-guu_1
trnan-guu_2 other upstream 438876 10476858 ~ 10476930 (-) True trnan-guu_2
trnan-guu_3 other upstream 441317 10479299 ~ 10479372 (-) True trnan-guu_3
trnan-guu_4 other upstream 442535 10480517 ~ 10480591 (-) True trnan-guu_4

Expression Profile