RNA id: TU73517


Basic Information

Item Value
RNA id TU73517
length 476
lncRNA type sense_over
GC content 0.38
exon number 4
gene id LOC113540372
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10078688 ~ 10080237 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCTGATACACTTGCAAGAGTGGTCTCTtgaatgtatttctttttatatttttttaaaataaaaataatgaaccCCTCAGCTCTAGCTGTTACTCTTTTAGCCTGTGCTCTCTTGTCAATGACAGAAGGACTTCTAATACAGCCCCGATGTCGGTGTACAGAAACTGTGCCAAGGGAAATCTCTGATCATAGAATTGTGAAGATGGAGAGATTTCAGCCTGGTCCTCACtgcaaaaatatagaaataatTGCTACAGTGAAATTCCGGAAGGAAATTACTTTGTGCCTCAACCCCAACGACAAGTGGGTTCAGAACGCCCTCAGAAGAAGGAACCTGGCACCATAAAATGCTACTAAGTTGAAGATGGGTGAAGGAAAACGAAAGAAGAGCTGATGGACTAAAATTctattttcagtatttcagtattttcagtatttcatCACTCATCATATGAGTAATTATCTAAGTTCTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73473 lncRNA downstream 5734 10070406 ~ 10073193 (-) True cxcl19
XR_003404074.2 lncRNA downstream 37148 10041567 ~ 10041779 (-) True LOC113540700
TU73338 lncRNA downstream 37161 10038976 ~ 10041766 (-) False G61900
XR_004577927.1 lncRNA upstream 122014 10202231 ~ 10211232 (-) True LOC113540369
TU73581 lncRNA upstream 283795 10364012 ~ 10364892 (-) True G62108
TU73582 lncRNA upstream 288104 10368321 ~ 10370563 (-) True G62109
TU73609 lncRNA upstream 394553 10474770 ~ 10483928 (-) True G62125
XR_004577943.1 lncRNA upstream 417304 10497521 ~ 10499087 (-) True LOC117596989
XM_026936815.2 mRNA downstream 5698 10070816 ~ 10073229 (-) False cxcl19
XM_034303271.1 mRNA downstream 25713 10046572 ~ 10053214 (-) False trmt10b
XM_034303270.1 mRNA downstream 25713 10046572 ~ 10053214 (-) False trmt10b
XM_026936792.2 mRNA downstream 25713 10046572 ~ 10053214 (-) True trmt10b
XM_034303215.1 mRNA downstream 57463 9997315 ~ 10021464 (-) False intu
XM_026936816.2 mRNA upstream 13530 10093747 ~ 10095116 (-) True LOC113540363
XM_026936742.2 mRNA upstream 15562 10095779 ~ 10106529 (-) True LOC113540311
XM_034303827.1 mRNA upstream 30945 10111162 ~ 10143429 (-) True LOC117597105
XM_034303249.1 mRNA upstream 87700 10167917 ~ 10189928 (-) True LOC113538503
XM_034303829.1 mRNA upstream 151457 10231674 ~ 10236612 (-) True LOC113547269
TU73337 other downstream 41352 10027987 ~ 10037575 (-) False G61900
TU73432 other downstream 273609 9776278 ~ 9805318 (-) True G61972
TU73323 other downstream 550124 9526574 ~ 9528803 (-) False LOC113526752
TU72884 other downstream 740182 9337826 ~ 9338745 (-) True G61537
XR_003403995.2 other downstream 751496 9314849 ~ 9327431 (-) False LOC113540087
trnan-guu other upstream 394179 10474396 ~ 10474470 (-) True trnan-guu
trnan-guu_1 other upstream 395406 10475623 ~ 10475696 (-) True trnan-guu_1
trnan-guu_2 other upstream 396641 10476858 ~ 10476930 (-) True trnan-guu_2
trnan-guu_3 other upstream 399082 10479299 ~ 10479372 (-) True trnan-guu_3
trnan-guu_4 other upstream 400300 10480517 ~ 10480591 (-) True trnan-guu_4

Expression Profile