RNA id: TU73581


Basic Information

Item Value
RNA id TU73581
length 881
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G62108
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10364012 ~ 10364892 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCTTCAGTTTTGTCAGATTAGCCAAAGAATATTATTTCTACAGACTTACTTAAATTATACCTATTATaagttaaatgttttctgtagatGCAGGTAGAAAGTATTAGATTGCCTCACATGTCAACACAGCTTTTATGATCCCTTTTTGTGCTTGAGACTCCAttattctttgtttctttcttctctctcttgctctccttTTCCCTTCCACCTCAATCCCTAGGAGTAAAGGGTCACATTCGTAATGTCTTCCCCCACTTTCCTTTACCATCTCCTCAATTTTCCTTATCAGTTCTTTCACCTGAGCTCCATCTTTGCCACAGCGTTTGTTTTCAAGCACATGGAACCTGTTTCCACACCTCTCAAGAAGCTTCTGAAAGGATTTTCCTGCATTTTTTATTCTCTGTTCTATGGGAATGGAGCCTAGTTCCTCCCCACGTGTGAATAGCAGCATGGTGTGAGCCCATGCTGTCTTGCCCAAAAGCTCCAAGTGTTCTTCCACCTGCCTGTAGTAGTCCTCTGTGACTGAGGCAAAGGACCGTATCACCAGAAGCAAAGCATGTGGTCCAGGCGGGCAGACTGTCACGCTTCTCATTGTCTCTCTTGTCACCCAGGCAGGAGTGCCATTGCCAGAATAGTACCATTCCCACCCTGGAGTATCTACCACTGTAACACGATGGCTTGCTATGTCAGCTCGTCttttcacacactcctctgttGGTTTGCCACTCTCAAATCCTCCAGCCACACCAAGAATGGTGTTTCCTGAAGAACTTTTCCCAGTTCCTTTGCGGCCTAGTAGGACCAGGCGCAGCTCTGGGAGAGGAGGATTATCATGATGAGGGCTCCCTGCTGTCTTTGCTGCAGCCTGCTGTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577927.1 lncRNA downstream 152780 10202231 ~ 10211232 (-) True LOC113540369
TU73517 lncRNA downstream 283795 10078927 ~ 10080217 (-) False LOC113540372
TU73473 lncRNA downstream 290819 10070406 ~ 10073193 (-) True cxcl19
XR_003404074.2 lncRNA downstream 322233 10041567 ~ 10041779 (-) True LOC113540700
XR_004578135.1 lncRNA downstream 323318 10040482 ~ 10040694 (-) True LOC117597227
TU73582 lncRNA upstream 3429 10368321 ~ 10370563 (-) True G62109
TU73609 lncRNA upstream 109878 10474770 ~ 10483928 (-) True G62125
XR_004577943.1 lncRNA upstream 132629 10497521 ~ 10499087 (-) True LOC117596989
TU73654 lncRNA upstream 169181 10534073 ~ 10534422 (-) True G62167
TU73657 lncRNA upstream 173406 10538298 ~ 10538589 (-) False gba2
XM_026936750.2 mRNA downstream 4609 10346280 ~ 10359403 (-) True f13a1b
XM_026936751.2 mRNA downstream 4642 10346280 ~ 10359370 (-) False f13a1b
XM_026936749.2 mRNA downstream 4643 10346280 ~ 10359369 (-) False f13a1b
XM_026936775.2 mRNA downstream 19881 10333469 ~ 10344131 (-) False LOC113540334
XM_034303264.1 mRNA downstream 19881 10333469 ~ 10344131 (-) True LOC113540334
XM_026936805.2 mRNA upstream 33661 10398553 ~ 10404916 (-) True tex261
XM_026936764.2 mRNA upstream 41220 10406112 ~ 10416565 (-) True shtn2
XM_026936795.2 mRNA upstream 65397 10430289 ~ 10448477 (-) True vax2
XM_026936810.2 mRNA upstream 95327 10460219 ~ 10474141 (-) False c4h20orf27
XM_034303277.1 mRNA upstream 95327 10460219 ~ 10473998 (-) False c4h20orf27
TU73337 other downstream 326437 10027987 ~ 10037575 (-) False G61900
TU73432 other downstream 558694 9776278 ~ 9805318 (-) True G61972
TU73323 other downstream 835209 9526574 ~ 9528803 (-) False LOC113526752
TU72884 other downstream 1025267 9337826 ~ 9338745 (-) True G61537
XR_003403995.2 other downstream 1036581 9314849 ~ 9327431 (-) False LOC113540087
trnan-guu other upstream 109504 10474396 ~ 10474470 (-) True trnan-guu
trnan-guu_1 other upstream 110731 10475623 ~ 10475696 (-) True trnan-guu_1
trnan-guu_2 other upstream 111966 10476858 ~ 10476930 (-) True trnan-guu_2
trnan-guu_3 other upstream 114407 10479299 ~ 10479372 (-) True trnan-guu_3
trnan-guu_4 other upstream 115625 10480517 ~ 10480591 (-) True trnan-guu_4

Expression Profile