RNA id: TU73582


Basic Information

Item Value
RNA id TU73582
length 2243
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G62109
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10368321 ~ 10370563 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCATTATAGTGGCAATAATGTCAGTCACTGTGCTTGGTAATAATGTCCATGGTTTGCTGCCACCATCTCATAAATCATCTTCAAAAGCTCTACTACGTGAGCTTCCCTGTGTCTGTTGTCCAACACATGATATCTACCTCCACATTTTGGATGAGCCATTCCAAATCCCCATTCCTCTTTATGTGTTGTTGTCCACTTTCTCCAAGAGCCTCTGCCCATGTAAACAGAACAACAGTATGCCTCCATGCAGTCTCCCCCAGTGTGGCCATGGTGCACTCCACTGCTCTCCTGTACTGTCCTGTGAAGGTTAAGTATGCAGGCAAGAGAAGGACAAAGGCATGAGGTCCAGGTGTGCACAGAGAAACACTGTGTATGAGATCCTTTTGAAAACTCATATTTATATCTCTGGAACATCTCCATTTTATCCCTTGGGGCTCCACAACCAGTAAGGGCTTGCCAGATATGTTTCCCCTCCATGGGTTGCCAACCTCGGGATCTTCCCCCAGAATGGTGTGTATGGCTGACTGGCGTGATGACCAAGCTTCTCCTATGAGCATCAGCTTGAGTTCAGAAAGTTGGTAGAATAAACCTTGAGTCACTTGGCCATCAGAACCGGCTGGTTCAAAGAATTCCTCAGCATCATCCTCCTTAGCAAGAGTGCCCACATCCTCCCTGTTTGCTCCATTCCTGTACTCTTCTATCTTGACCTCTAATGCTCTTTTGCCTTTAACTAGGCATGCTAACTCCTCATTCTCAAGCTCTCTGTTTGTGGTTTCAGATGATGAAGCCATTTCTGCACTCTGGTCATCTTCTGCTGCACTGCTATTTCCTTTTTCTCTATCATAGGTTCTACTATCAATTCCAACCTCTTGATACATTGTTTCACTGTTCCTTGTCTGTGTTAGATTAATTGCTGTCTTTTGGTTCCATGGTTGAAAATCAGGACTGGGATTACTGTTGATCATTTTAAGTTCCATGTTGTACAGATATTTTCCCCACTTTTCCAGTTGCTCTGATTTCATCTTTAACATTTGTTTCTCAATGTTCATCTCACTTTTCTGGTTCTCTAGTTCAGCTGTATgattttctaaatatttcttCTTGGACTCGAGTGTTATCTTCAGTTCATTCAACTCTTGCTCTGTTTTCTTGAATGCTTGATCTTTTGACTTTAGTTCTAGTTCACATTTTTCCATGTTGTGCTCCTTAATATCCAGTTCTTTATAGCGATTACTCAggtctttttctttatttgtgatGTTGTGCTCTCTGATGCTAAGTTCTTTCTCCAGGTCACTTACCtcatgctgttttgtttctaaAGAACCCTTTATTTCTTctattatttcttgttttttcttgagGTCACTTAGCATGCTGtcattttgttctttgttaatttgcacctctctttctcttttctgcaCAATTATCTCTCTCTTGTCCAAATATATTTCTGCGCTCTTAATATTTTGCTCTCTTTTCTGAAACTCatcctctttcttcttcagtTCTTGCTCCCTTTTTGCTAAGGTCTTTCTGAAATCTTCTAATTGGCTTTCCCATGTTTCAGTAATCTGGTGTTGTTGGTTGCCCAATAGCTGTTGCTGTACTGGCTCAACCTCCTCATTTTTGCCAAGTAGCTCTTGGCATTTTAGTTGAAGGTTATGTTCTCTTTGTACAAGCTCCTGTTCTTTTTTATGAAGTTCATTTGACCGCAGTAGCAGATCATATTCTTTGTTACTTAGTTCAGATTGCCATTTTTCATTATCTCGTTTGCTTTTCTCCAGTTCTTGCACCCCTTTCGACAGTTCCTGTGCCTTGACTTCACACAACTGCTCTGAATTCACTAGCTCTTGCTCTATTTTCTTAAGTTCCTTTTCCTTGTTGTCCAGATTCTCTCTGAGACTCTCaaagtctttcttttctttttgaagaTTGATTTGTTTTACCAAAAGTTCATCTTGCATTGTTAtcagttctttttctttctcttcaagCTGTTGCCTAATGTTTTCAATCTCCTTTTCCTGCTTTTCAAAAAATTCTGTTTGTGCTTTCTTCTTACTTTCCAGTATTTTCTCTGCAGCCTCGTATTCTTCATATATCTTGGCAATTTGTTTTTCCTTCATGTCTaagtctttttctctgtctttaaaTTCTTGCTCTCTTTTATCAAGCATATCCTCAGTATTCCTCAGTTCCTGCTCCCTTATTGCTAATGTATCTTTGATAGTCTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73581 lncRNA downstream 3429 10364012 ~ 10364892 (-) True G62108
XR_004577927.1 lncRNA downstream 157089 10202231 ~ 10211232 (-) True LOC113540369
TU73517 lncRNA downstream 288104 10078927 ~ 10080217 (-) False LOC113540372
TU73473 lncRNA downstream 295128 10070406 ~ 10073193 (-) True cxcl19
XR_003404074.2 lncRNA downstream 326542 10041567 ~ 10041779 (-) True LOC113540700
TU73609 lncRNA upstream 104207 10474770 ~ 10483928 (-) True G62125
XR_004577943.1 lncRNA upstream 126958 10497521 ~ 10499087 (-) True LOC117596989
TU73654 lncRNA upstream 163510 10534073 ~ 10534422 (-) True G62167
TU73657 lncRNA upstream 167735 10538298 ~ 10538589 (-) False gba2
TU73670 lncRNA upstream 201592 10572155 ~ 10572360 (-) True G62183
XM_026936750.2 mRNA downstream 8918 10346280 ~ 10359403 (-) True f13a1b
XM_026936751.2 mRNA downstream 8951 10346280 ~ 10359370 (-) False f13a1b
XM_026936749.2 mRNA downstream 8952 10346280 ~ 10359369 (-) False f13a1b
XM_026936775.2 mRNA downstream 24190 10333469 ~ 10344131 (-) False LOC113540334
XM_034303264.1 mRNA downstream 24190 10333469 ~ 10344131 (-) True LOC113540334
XM_026936805.2 mRNA upstream 27990 10398553 ~ 10404916 (-) True tex261
XM_026936764.2 mRNA upstream 35549 10406112 ~ 10416565 (-) True shtn2
XM_026936795.2 mRNA upstream 59726 10430289 ~ 10448477 (-) True vax2
XM_026936810.2 mRNA upstream 89656 10460219 ~ 10474141 (-) False c4h20orf27
XM_034303277.1 mRNA upstream 89656 10460219 ~ 10473998 (-) False c4h20orf27
TU73337 other downstream 330746 10027987 ~ 10037575 (-) False G61900
TU73432 other downstream 563003 9776278 ~ 9805318 (-) True G61972
TU73323 other downstream 839518 9526574 ~ 9528803 (-) False LOC113526752
TU72884 other downstream 1029576 9337826 ~ 9338745 (-) True G61537
XR_003403995.2 other downstream 1040890 9314849 ~ 9327431 (-) False LOC113540087
trnan-guu other upstream 103833 10474396 ~ 10474470 (-) True trnan-guu
trnan-guu_1 other upstream 105060 10475623 ~ 10475696 (-) True trnan-guu_1
trnan-guu_2 other upstream 106295 10476858 ~ 10476930 (-) True trnan-guu_2
trnan-guu_3 other upstream 108736 10479299 ~ 10479372 (-) True trnan-guu_3
trnan-guu_4 other upstream 109954 10480517 ~ 10480591 (-) True trnan-guu_4

Expression Profile