RNA id: TU73719


Basic Information

Item Value
RNA id TU73719
length 2153
RNA type TUCP
GC content 0.41
exon number 5
gene id c4h4orf48
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10657357 ~ 10663411 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCGTCCACAGTCCTGCGCGGGAGATGCAGCATGCCGAGCAGCAGTTTAAGCTTCACCGGAGGAGATAAATTGGAGAAACACAGTCGGATGTTGTCGATAACCGACACTGTAAGCAGAGAGCCGATGCTCGAAGGCGTCCACAACTCGTCCGTCGAGCCTAGTTTGTTGTGAAGCCACAGGCCGGTGTCGCTGTCCCTCATCGACGCCATCTTGGAAAAAGACGAATAATTAGTTCCGGCATTTTAACAGACtacctaaaaacacacacacacacacacacacacacacacagagccaggaccccggacaaacacacacacattacacaacacaactttatttcatatatatatatatatatatatatatgtgtgtgtgtgtatacaatgaTATATACAATGTCCACTgttttgtattgtatatattgtaaataatcatataatcattcATCATATCTTTGTGTATCAACATAACATGTACCTCTGCAGAAACCTGACTCTAACTCAGACTTCTGATTTAGTTTAGGTTATACAGTAGAGTGCAAAACTTTGCACACCCTTACACCacaatggaaaaagaaaagtgtactTAACATCAAGACAAACAAAGTGAGTGAGGTTTCAGCTGTTccttcattataattattacagcAGTGGTCAAATATGTTGTGCTGAGGGTTTAAATTTtctggcaagaaaaaaaaaaaaggagcatgttaccaagaaacagcAAAACGTCCTTCATCCTGAAGACTGCCCCAGTGTGAAAAACTTAATGCTCGACATAACACACAGGCTGGAACAGGCTCAGCACCAGGATGGGGGTTACTGTCGCTGCCAGCCACGTGACCACAGCGGACGAATCAGAGCGCAGGACGCGGCCAGTCTGTTGAATAAAACATTGGGCTCCATGTTGTCCTGTAGGTTTGCAGAAGAGAAACTGGAGCATCTTTCTGTACAGCCAGCTGAAGTGCAGCATCAATTCCGTAGGGCCGCTGGTGAGAGACAGGAGGATGAGGTCGAGCTGCGCTTTGGCTccggtgctgctgctgctgctggcggTTCAGCTCATCACCGCACAGCCAGACTCGGGCACTGTTATTCCTGCTGAGAGTCGGCCATGTGTGGACTGCCATGCGTTTGAATTCATGCAGCGAGCACTGCAGGATCTGAAGAAGACGGCCTTCAACCTCGACTCACGGactgagaatCTGGTGCTGAGAGCTGAGAGGAGGGCGCTGTGTGACTGCATGCCCATCAGCACCTTAAACTGAACACTGAGCCTCTGATCACCGTCACAGCGTCGCTGTAGAGCTTTCAGCCCATCACGCCATCTTATTGTGTACTTAttcatataaaaacatgaacactagtcaaatgcaattttctttttctctgtggtCTAAACAACCTGTTTTGCAAACTTCTAACAGAACACAAGACTGGCATGTTAAAGTTACAGATTTGTATGAGCCAATACTATTCTGATCAGTATATAACGCTTTATCATACATTTCTATGTTTCTATAATAAATGTTGTGGTtatatatgtaatgtttatgcttgatttcttcatttttagaTTATAGTTCACACTTAAAcgtgtaaaatattatttgcaCAATATTTAGAATTACTGCTATTCTATGTCACACTATTAAGGCTTCtagtattacatttttaataaataacaatacataCAACTGAATAATATTAGAAATGCAGCAGATAGATGCATTTTCATGTAGAAATCTGTAGAGAAGAAATACGTTTTAAGAAATTTTATAatacaaatgtataaatgtgtgtaggAAGGGTAGTGTTCTGAGTATCTACACTTATTGGTAAGAAAAGGCATGATAAATGTAGTACACATTAGTTTAGCTGTTTTATATCGTCACTGGGCCAATCAAATCCCTGATTGTCATGTTGGTGTGTAGCTGGGTTTAATACAGATTATACTGTGTTGCAGAGCTGGGAGAGTCAATAAGCAGTGGCTCACTGAATGTAGCTGCAACGGTTATCAATTTAGAATATTAATAACTGCAATGTCCTGATGCtacttttttgtcatttgtaaaCAGTTTTCATTTGAAGTTTCATTTCAAGTTAAATGTatctaaaacaaaattaaacagcaTTGAACACAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577940.1 lncRNA upstream 150880 10499275 ~ 10506477 (+) True LOC117596986
TU73615 lncRNA upstream 159997 10497130 ~ 10497360 (+) True G62131
TU73272 lncRNA upstream 171315 10474768 ~ 10486042 (+) True trnak-cuu_13
TU73244 lncRNA upstream 298393 10357814 ~ 10358964 (+) True G61842
XR_004577941.1 lncRNA upstream 366673 10289874 ~ 10290684 (+) True LOC117596987
XR_004577939.1 lncRNA downstream 152343 10815750 ~ 10816552 (+) True LOC117596985
TU73906 lncRNA downstream 201248 10864655 ~ 10864861 (+) True G62373
TU73963 lncRNA downstream 243618 10907025 ~ 10910142 (+) True G62416
XR_004577928.1 lncRNA downstream 356726 11020133 ~ 11022796 (+) True LOC113540371
XR_004577929.1 lncRNA downstream 356732 11020139 ~ 11022796 (+) False LOC113540371
XM_034303242.1 mRNA upstream 12606 10635705 ~ 10644751 (+) True faah2b
XM_026936773.2 mRNA upstream 12606 10635705 ~ 10644751 (+) False faah2b
XM_026936745.2 mRNA upstream 62235 10574923 ~ 10595122 (+) True pik3c3
XM_026936783.2 mRNA upstream 87873 10562232 ~ 10569484 (+) True rgp1
XM_034303266.1 mRNA upstream 87873 10562232 ~ 10569484 (+) False rgp1
XM_026936800.2 mRNA downstream 15850 10679257 ~ 10689652 (+) True nat8l
XM_026936790.2 mRNA downstream 91470 10754877 ~ 10760025 (+) False ptgr1
XM_026936791.2 mRNA downstream 91472 10754879 ~ 10760025 (+) True ptgr1
XM_034303269.1 mRNA downstream 100168 10763575 ~ 10770088 (+) False si:dkey-11k2.7
XM_026936788.2 mRNA downstream 100169 10763576 ~ 10770209 (+) True si:dkey-11k2.7
trnak-cuu_21 other upstream 91633 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 125829 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 126313 10530971 ~ 10531044 (+) True trnan-guu_13
trnak-cuu_19 other upstream 161887 10495398 ~ 10495470 (+) True trnak-cuu_19
trnak-cuu_18 other upstream 165488 10491797 ~ 10491869 (+) True trnak-cuu_18
XR_003403980.2 other downstream 981495 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU74787 other downstream 1629107 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 2754970 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 2807362 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 2895216 13558623 ~ 13562266 (+) True cited1

Expression Profile