RNA id: TU73963


Basic Information

Item Value
RNA id TU73963
length 880
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id G62416
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10907025 ~ 10910142 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGGGAGAAAAAATGTCAATACTGTGTTTTATTGACAAATGATTCTATTGCATCAGTTTCACTTTAACAATGATTTTTCAGCATCACTCATTGTAAACTTCACAAATCAAGCGTGACAGTTCTCTAAGAAGGATAAATTAGGGGAAGAGGGATGTGGacaggaagatgctgtagtttgCTACAGAACATAGAGACTTTGTTACACAATAGCCAGCAGAGTCGCCACCGTGGAGTTTGGGTCAGATGGTCGTTTAGGgaagagtggtgtgtgtgtgtgtgtgttgaggctGCCAGGTCACCTGTGGTGCTGAAGGCAGGTCTGGTGTTTATAAGGCCTGCAGGAGGTTGTTGGGGTGTTGGTGCACTCGCCCTCCTCTTAGCGCAAGGACCAGATGCAATACAGAGCCACCCTGGATTTTATAGTCTGCTGCTGTTTTCTCATCGTATCTGTTTTCCACTGTAGATGAGTCTCTGTTGCTGGGGTGGAATTCCCTCTTTTTCCTCcactctttcttttattctttccacCTTGTCTGTGGGCTCGATGTCGATTTCTATTTCTTTACCAGTCAGGGTCTTAACTTTAATCAGCATTGTGGCTTTTGTGTTGCTTAAACACACGCGGTGAATAAACGCAAAAAGTAAAACCAATAAGgcaagaaaaaagacagaatattCCTCTATCAATAATTCCTTGGATTTATCTTTTGCATTCAATTGAAGTTCCTGAGTAGCTCACAAATAATTCCTACCATCCACTAGTCTGAATTAAGAGTTCCGACAGAAACTACgagaataaattaattttcttgGAAATAAATGAGTTATAACGACAAATAAATACGCCAATataattaataagtaattattttcatatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73906 lncRNA upstream 42164 10864655 ~ 10864861 (+) True G62373
XR_004577939.1 lncRNA upstream 90473 10815750 ~ 10816552 (+) True LOC117596985
TU73717 lncRNA upstream 243618 10657852 ~ 10663407 (+) False c4h4orf48
XR_004577940.1 lncRNA upstream 400548 10499275 ~ 10506477 (+) True LOC117596986
TU73615 lncRNA upstream 409665 10497130 ~ 10497360 (+) True G62131
XR_004577928.1 lncRNA downstream 109991 11020133 ~ 11022796 (+) True LOC113540371
XR_004577929.1 lncRNA downstream 109997 11020139 ~ 11022796 (+) False LOC113540371
TU74139 lncRNA downstream 266887 11177029 ~ 11193851 (+) True G62549
XR_004577937.1 lncRNA downstream 272628 11182770 ~ 11183734 (+) True LOC117596983
TU74145 lncRNA downstream 305013 11215155 ~ 11215743 (+) True G62554
XM_026936772.2 mRNA upstream 1467 10885506 ~ 10905558 (+) True slc7a8a
XM_026936814.2 mRNA upstream 131789 10771447 ~ 10775236 (+) True txn
XM_026936788.2 mRNA upstream 136816 10763576 ~ 10770209 (+) True si:dkey-11k2.7
XM_034303269.1 mRNA upstream 136937 10763575 ~ 10770088 (+) False si:dkey-11k2.7
XM_026936790.2 mRNA upstream 147000 10754877 ~ 10760025 (+) False ptgr1
XM_034303268.1 mRNA downstream 774 10910916 ~ 10917550 (+) True gmpr2
XM_034303255.1 mRNA downstream 8361 10918503 ~ 10939471 (+) True LOC113539892
XM_034303256.1 mRNA downstream 8361 10918503 ~ 10939471 (+) False LOC113539892
XM_034303248.1 mRNA downstream 34037 10944179 ~ 10962559 (+) True LOC117596975
XM_034303252.1 mRNA downstream 53920 10964062 ~ 10988566 (+) True LOC117596976
TU73719 other upstream 243618 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 341301 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 375497 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 375981 10530971 ~ 10531044 (+) True trnan-guu_13
trnak-cuu_19 other upstream 411555 10495398 ~ 10495470 (+) True trnak-cuu_19
XR_003403980.2 other downstream 734760 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU74787 other downstream 1382372 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 2508235 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 2560627 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 2648481 13558623 ~ 13562266 (+) True cited1

Expression Profile