RNA id: XM_026936817.2


Basic Information

Item Value
RNA id XM_026936817.2
length 951
RNA type mRNA
GC content 0.40
exon number 4
gene id nedd8
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10907025 ~ 10910211 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAACCCGCTATTTTGCTTTTAGTTCCGTCCCAAAGTTAAACACAGACTGTTTACGTATTTGTTGAAttacatatgaaaataattacttattaattatATTGGCGTATTTATTTGTCGTTATAACTCATTTATTTCcaagaaaattaatttattctcGTAGTTTCTGTCGGAACTCTTAATTCAGACTAGTGGATGGTAGGAATTATTTGTGAGCTACTCAGGAACTTCAATTGAATGCAAAAGATAAATCCAAGGAATTATTGATAGAGGaatattctgtcttttttcttgcCTTATTGGTTTTACTTTTTGCGTTTATTCACCGCGTGTGTTTAAGCAACACAAAAGCCACAATGCTGATTAAAGTTAAGACCCTGACTGGTAAAGAAATAGAAATCGACATCGAGCCCACAGACAAGgtggaaagaataaaagaaagagtgGAGGAAAAAGAGGGAATTCCACCCCAGCAACAGAGACTCATCTACAGTGGAAAACAGATGAACGATGAGAAAACAGCAGCAGACTATAAAATCCAGGGTGGCTCTGTATTGCATCTGGTCCTTGCGCTAAGAGGAGGGCGAGTGCACCAACACCCCAACAACCTCCTGCAGGCCTTATAAACACCAGACCTGCCTTCAGCACCACAGGTGACCTGGCagcctcaacacacacacacacacaccactcttcCCTAAACGACCATCTGACCCAAACTCCACGGTGGCGACTCTGCTGGCTATTGTGTAACAAAGTCTCTATGTTCTGTAGcaaactacagcatcttcctgtCCACATCCCTCTTCCCCTAATTTATCCTTCTTAGAGAACTGTCACGCTTGATTTGTGAAGTTTACAATGAGTGATGCTGAAAAATCATTGTTAAAGTGAAACTGATGCAATAGAATCATTTGTCAATAAAACACAGTATTGACATTTTTTCTCCCTGA

Function

GO: NA

KEGG:

id description
K12158 NEDD8; ubiquitin-like protein Nedd8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73670 lncRNA downstream 334665 10572155 ~ 10572360 (-) True G62183
TU73657 lncRNA downstream 368436 10538298 ~ 10538589 (-) False gba2
TU73654 lncRNA downstream 372603 10534073 ~ 10534422 (-) True G62167
XR_004577943.1 lncRNA downstream 407938 10497521 ~ 10499087 (-) True LOC117596989
TU73609 lncRNA downstream 423097 10474770 ~ 10483928 (-) True G62125
TU74041 lncRNA upstream 16629 10926840 ~ 10953744 (-) True G62469
TU74080 lncRNA upstream 132134 11042345 ~ 11074703 (-) True G62504
XR_004577933.1 lncRNA upstream 170320 11080531 ~ 11083012 (-) True LOC117596980
TU74367 lncRNA upstream 361989 11272200 ~ 11360044 (-) False LOC113540328
TU74365 lncRNA upstream 401362 11311573 ~ 11313616 (-) False LOC113538166
XM_026936738.2 mRNA downstream 43527 10775252 ~ 10863498 (-) False svep1
XM_026936739.2 mRNA downstream 43527 10775252 ~ 10863498 (-) False svep1
XM_026936737.2 mRNA downstream 43527 10775252 ~ 10863498 (-) False svep1
XM_034303209.1 mRNA downstream 43527 10782153 ~ 10863498 (-) True svep1
XM_026936740.2 mRNA downstream 43527 10785158 ~ 10863498 (-) False svep1
XM_034303278.1 mRNA upstream 112659 11022870 ~ 11023641 (-) True LOC113540343
XM_034303226.1 mRNA upstream 227204 11137415 ~ 11146874 (-) False LOC113539898
XM_034303225.1 mRNA upstream 227204 11137415 ~ 11146874 (-) False LOC113539898
XM_026936001.2 mRNA upstream 227204 11137415 ~ 11146874 (-) True LOC113539898
XM_034303227.1 mRNA upstream 228021 11138232 ~ 11146874 (-) False LOC113539898
XR_004577924.1 other downstream 43527 10776760 ~ 10863498 (-) False svep1
XR_004577923.1 other downstream 43527 10781222 ~ 10863498 (-) False svep1
XR_004577925.1 other downstream 159379 10694129 ~ 10747646 (-) False poln
XR_004577926.1 other downstream 159379 10706010 ~ 10747646 (-) False poln
trnan-guu_12 other downstream 411787 10495165 ~ 10495238 (-) True trnan-guu_12
TU74341 other upstream 267500 11177711 ~ 11182313 (-) False mrpl52
XR_003404121.1 other upstream 298522 11208733 ~ 11208833 (-) True LOC113540753
XR_003404119.1 other upstream 302623 11212834 ~ 11212934 (-) True LOC113540751
XR_003404120.1 other upstream 304111 11214322 ~ 11214422 (-) True LOC113540752
TU74378 other upstream 623553 11533764 ~ 11535013 (-) False LOC117597110

Expression Profile