RNA id: TU74113


Basic Information

Item Value
RNA id TU74113
length 401
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC117596972
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11590715 ~ 11605230 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGAAGTGAAAGTAAATTCTTTTTTATACTAGACTCTGAAAGGACTTTAAACACAGACCATTCTCACTCCCTGAAAAGAGGCAAGTAAAATAAAGGTTAAAAACACAGGAGGAAGTAAACGACTGAATCTACATCACAAACAAAAGGCGGAAGAAGGAAGAGCATGGAAGAACCACCTTCATtccATGTTGGTCGTGACTCCAGCAGTCTCCTGTCTGAAGAGCAGCTGCTGTGTTCGATCTGTCTGGATGTGTTCACTGATCCAGTCACCACTCCATGTGGACACAACTTCTGCAAGAGCTGCCTTACACAGTGCTGGGAGAAGAGTCAACACTGTCACTGTCCATTATGTAAAGAGAAATTCACCAAGAGACCTGAACTGAAGATTAATACAACACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577942.1 lncRNA upstream 137842 11463083 ~ 11464606 (+) True LOC117596988
TU74234 lncRNA upstream 164593 11437529 ~ 11437855 (+) True G62618
XR_003404022.2 lncRNA upstream 181270 11418007 ~ 11421178 (+) True LOC113540368
XR_004577934.1 lncRNA upstream 276696 11322476 ~ 11325752 (+) True LOC117596981
TU74200 lncRNA upstream 277256 11322470 ~ 11325192 (+) False LOC117596981
TU74255 lncRNA downstream 3526 11608756 ~ 11609269 (+) True G62639
TU74256 lncRNA downstream 5606 11610836 ~ 11611057 (+) True G62640
TU74260 lncRNA downstream 50237 11655467 ~ 11705262 (+) False si:ch211-200p22.4
TU74270 lncRNA downstream 70083 11675313 ~ 11675695 (+) True G62654
TU74587 lncRNA downstream 257403 11862633 ~ 11863683 (+) True G62932
XM_034303238.1 mRNA upstream 2097 11590715 ~ 11600351 (+) True LOC117596972
XM_034303231.1 mRNA upstream 20026 11467950 ~ 11582422 (+) False LOC117596971
XM_026936806.2 mRNA downstream 8538 11613768 ~ 11619677 (+) True vbp1
XM_026936969.2 mRNA downstream 26746 11631976 ~ 11637570 (+) True zgc:162171
XM_034304105.1 mRNA downstream 39671 11644901 ~ 11692597 (+) False si:ch211-200p22.4
XM_034304104.1 mRNA downstream 39672 11644902 ~ 11705336 (+) False si:ch211-200p22.4
XM_034304101.1 mRNA downstream 39673 11644903 ~ 11705336 (+) True si:ch211-200p22.4
TU73719 other upstream 939041 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 1036724 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 1070920 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 1071404 10530971 ~ 10531044 (+) True trnan-guu_13
trnak-cuu_19 other upstream 1106978 10495398 ~ 10495470 (+) True trnak-cuu_19
XR_003403980.2 other downstream 39672 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU74787 other downstream 687284 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 1813147 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 1865539 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 1953393 13558623 ~ 13562266 (+) True cited1

Expression Profile