RNA id: TU74121


Basic Information

Item Value
RNA id TU74121
length 323
lncRNA type sense_over
GC content 0.46
exon number 3
gene id LOC117596972
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11590715 ~ 11605230 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGAAAGCGGAAATCAGGTTAAAAACACAGGAGGAAGTAAACGACTGAATCTACATCACAAACAAAAGGCGGAAGAAGGAAGAGCATGGAAGAACCACCTTCATtccATGTTGGTCGTGACTCCAGCAGTCTCCTGTCTGAAGAGCAGCTGCTGTGTTCGATCTGTCTGGATGTGTTCACTGATCCAGTCACCACTCCATGTGGACACAACTTCTGCAAGAGCTGCCTTACACAGTGCTGGGAGAAGAGTCAACACTGTCACTGTCCATTATGTAAAGAGAAATTCACCAAGAGACCTGAACTGAAGATTAATACAACACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577942.1 lncRNA upstream 126120 11463083 ~ 11464606 (+) True LOC117596988
TU74234 lncRNA upstream 152871 11437529 ~ 11437855 (+) True G62618
XR_003404022.2 lncRNA upstream 169548 11418007 ~ 11421178 (+) True LOC113540368
TU74196 lncRNA upstream 230211 11320097 ~ 11360515 (+) True G62585
TU74255 lncRNA downstream 3526 11608756 ~ 11609269 (+) True G62639
TU74256 lncRNA downstream 5606 11610836 ~ 11611057 (+) True G62640
TU74260 lncRNA downstream 50237 11655467 ~ 11705262 (+) False si:ch211-200p22.4
TU74270 lncRNA downstream 70083 11675313 ~ 11675695 (+) True G62654
TU74587 lncRNA downstream 257403 11862633 ~ 11863683 (+) True G62932
XM_034303231.1 mRNA upstream 8304 11467950 ~ 11582422 (+) False LOC117596971
XM_034303232.1 mRNA upstream 8304 11549600 ~ 11582422 (+) False LOC117596971
XM_034303233.1 mRNA upstream 8304 11549651 ~ 11582422 (+) False LOC117596971
XM_034303229.1 mRNA upstream 8304 11570128 ~ 11582422 (+) True LOC117596971
XM_034303230.1 mRNA upstream 8304 11570128 ~ 11582422 (+) False LOC117596971
XM_026936806.2 mRNA downstream 8538 11613768 ~ 11619677 (+) True vbp1
XM_026936969.2 mRNA downstream 26746 11631976 ~ 11637570 (+) True zgc:162171
XM_034304105.1 mRNA downstream 39671 11644901 ~ 11692597 (+) False si:ch211-200p22.4
XM_034304104.1 mRNA downstream 39672 11644902 ~ 11705336 (+) False si:ch211-200p22.4
XM_034304101.1 mRNA downstream 39673 11644903 ~ 11705336 (+) True si:ch211-200p22.4
TU73719 other upstream 927319 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 1025002 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 1059198 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 1059682 10530971 ~ 10531044 (+) True trnan-guu_13
trnak-cuu_19 other upstream 1095256 10495398 ~ 10495470 (+) True trnak-cuu_19
XR_003403980.2 other downstream 39672 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU74787 other downstream 687284 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 1813147 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 1865539 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 1953393 13558623 ~ 13562266 (+) True cited1

Expression Profile