RNA id: XM_034303238.1


Basic Information

Item Value
RNA id XM_034303238.1
length 1989
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC117596972
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11590715 ~ 11605230 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCCTAACGAAGTGAAAGCGGAAATCAGTTACAGTAGCTCCCATCGATCATAAACTCTTCATTTTATACTAAACTCTTTTTATACTAAATTCTTTTTATACTAGACTCTGAAAGGACTTTAAACACAGACCATTCTCACTCCCTGAAAAGAGGCAAGTAAAATAAAGGTTAAAAACACAGGAGGAAGTAAATGGCTGAATCTACATCACAAACAAAAGGCAGAAGAAGGAGGAGCATGGAAGAACCAGGTTCATTTGCTCGTGACTCCAGCAGTCTCCTGTCTGAAGAGCAGCTGCTGTGTTCGATCTGTCTGGATGTGTTCACTGATCCAGTCACCACTCCATGTGGACACAACTTCTGCAAGAGCTGCCTTACACAGTGCTGGGAGAAGAGTCAACACTGTCACTGTCCATTATGTAAAGACAACTTCACCAAGAGACCTGAACTGAAGATTAATACAACACTGAGAGAGGTTGCAGATCACTTCAAGAAGAAAAGTGGTCCTGACAAACCTGAGGTTCTTTGTGACGCCTGCACTGGAGAGAAGCTGAAGGCCCTGAAATCCTGTCTCGATTGTTGTGCAGCTTTCTGTAAAACTCATTTAGAGCCACATAATAACATTCCAAAGCTCAAGAAACACAAACTAATAAACCCTGTAGAGAACCTGCAGGACTACATATGCCAGAAACATGAGAGAGCTCTGGAGCTGTTCTGTAGAGATgatcagacgtgtgtgtgtcagttctgCACTGAAGGAGATCACAAGAATCACAACACTGTTCCTATAGAggaggagagcagagagaggaagACTCAGCTGGggaaaacacagacagatgtgCAGCAGATGATTCAGGACCAAATGAAGAAGATCCAAGAGATCAAACACTCAGTAGAGCtcagtaaaAgaagcacagagaaagagaaagcagacaGTGTTGAAGTCTTCACTGCTCTGATTCGCTCCATTGAGAGAAGTCAGGCTGAGCTGCTCGAGGTGAtggaggagaagcagaaagCAGCAGAGAGGCAGGCTGAAGGACTCATTAAAGAGCTGGAGCAGGAAATCACTGTGCTAAAGAGGAGAGacactgagctggagcagctctcacacactgaggAGCATCTCCACCTCCTACAGATTTACTCCTCCATGTGCAGCCCTCCACACACCAAGAACTGGACTGAGATCAGTATTAACACTGATCTGAGTGGGGACACTGTGAGGACAGCTCTGTCTCAGCTTCAGCAGACTCTGAATGAGAAACTCACTAAAACACTCAATGACAAGTTAAAGGAAACAGTTTCCACAGAACTGAAGAGGATTCAGCAGTATGCAGtggATGTGACTCTGGATCCTGATACAGCTCATCCCAATCTCATCCTGTCTGCTGATGGAAAACAAGTGACAGACGGAGACGAGTGGAGGGATCTCCCTGATACACCACAGAGGTTTAAttattgtgtctgtgttctgggAAAGCAGAGTTTCTCCTCAGGGAGATTCTATTATGAGGTGCAGGTCAGAGGGAAAACTGATTGGGATCTCGGAGTCACCACAGAGTCCAGTAACAGGAAAGGGGACGTTACACTGAGACCTCAGAATggattctggactgtgattcTGAGGAATGAGAATCAGTACTTGGCTTGTGCTGGTCCTGACGTCCCcctcacactgagagagaaggtGGAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTGGAGTCCAGCTCTCATATCTACTCTTTCACTGGTCAGTCTTTCACTGAGAAACTCTATCCATACTTCAGTCCTTATTTAAATGAAGGAGGTAAAAATTCAGCATCACTGATCATCTCTCctgtatttaacactgaatgaaTTTTCACCTCACAGATTTAATCATCTATTAAATGgtgagaataaaaagaaatatattttttggtgAATTTTAGAAATACATACTCCCTTATACAATGctg

Function

GO: NA

KEGG:

id description
K12015 TRIM39; tripartite motif-containing protein 39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577942.1 lncRNA upstream 126109 11463083 ~ 11464606 (+) True LOC117596988
TU74234 lncRNA upstream 152860 11437529 ~ 11437855 (+) True G62618
XR_003404022.2 lncRNA upstream 169537 11418007 ~ 11421178 (+) True LOC113540368
XR_004577934.1 lncRNA upstream 264963 11322476 ~ 11325752 (+) True LOC117596981
TU74200 lncRNA upstream 265523 11322470 ~ 11325192 (+) False LOC117596981
TU74113 lncRNA downstream 2097 11602448 ~ 11605230 (+) False LOC117596972
TU74255 lncRNA downstream 8405 11608756 ~ 11609269 (+) True G62639
TU74256 lncRNA downstream 10485 11610836 ~ 11611057 (+) True G62640
TU74260 lncRNA downstream 55116 11655467 ~ 11705262 (+) False si:ch211-200p22.4
TU74270 lncRNA downstream 74962 11675313 ~ 11675695 (+) True G62654
XM_034303231.1 mRNA upstream 8293 11467950 ~ 11582422 (+) False LOC117596971
XM_034303232.1 mRNA upstream 8293 11549600 ~ 11582422 (+) False LOC117596971
XM_034303233.1 mRNA upstream 8293 11549651 ~ 11582422 (+) False LOC117596971
XM_034303229.1 mRNA upstream 8293 11570128 ~ 11582422 (+) True LOC117596971
XM_034303230.1 mRNA upstream 8293 11570128 ~ 11582422 (+) False LOC117596971
XM_026936806.2 mRNA downstream 13417 11613768 ~ 11619677 (+) True vbp1
XM_026936969.2 mRNA downstream 31625 11631976 ~ 11637570 (+) True zgc:162171
XM_034304105.1 mRNA downstream 44550 11644901 ~ 11692597 (+) False si:ch211-200p22.4
XM_034304104.1 mRNA downstream 44551 11644902 ~ 11705336 (+) False si:ch211-200p22.4
XM_034304101.1 mRNA downstream 44552 11644903 ~ 11705336 (+) True si:ch211-200p22.4
TU73719 other upstream 927308 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 1024991 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 1059187 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 1059671 10530971 ~ 10531044 (+) True trnan-guu_13
trnak-cuu_19 other upstream 1095245 10495398 ~ 10495470 (+) True trnak-cuu_19
XR_003403980.2 other downstream 44551 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU74787 other downstream 692163 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 1818026 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 1870418 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 1958272 13558623 ~ 13562266 (+) True cited1

Expression Profile