RNA id: XR_004577934.1


Basic Information

Item Value
RNA id XR_004577934.1
length 1929
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id LOC117596981
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11322470 ~ 11325752 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGAAAACCCCTGATGACACTGAGAAACACTGCTACTCGTTTATCAGCACTGATGTCGTTAGCCTCGACAAAATGCTCAGACCATTCGACCATTGCTCCCTCGCTTCGTCCAATGCCTCGACATGCCCGATGATAGAAGCCATTGTGTAATCTTGATTGACAGCTTGATAACAGCAGCGGGAACTTTGCACTCGTCACCAATTTGTGTTATGTTTGCGAACACAAACACGACACCAGGATGGCTGCCACAacacagtgttttctttcttttattcttggCAACTCAAAAACGTCTCAGATTGGAGCGCCCTCTAGTGGTGAACAGGTGAACTTAAATTGAAACACCATTTTTAAAGAACCGCATGACTAAGTCTCCAAAACCAGGGCAACAGTGACATTGACGTGACATTGATCTCACACATCATGTACCCATCAGTCTCTGCCCCATAACACTGATTTTGAGCTTCTCCGCTACTTCTCTGCATGGGATATGGCCCTGAACTGTATTCTGGGCTTAACTGCTCTTCGTAATGCTTCAGATATCTGAACCGGAAGTGTGGTGGTCTTTCTCTGGAACAATGTCATCAAGAGTAGATGACCCACCTTCATCTTCACTTTAGCTCTCAGGCCTCTCTCTACTCAAAGTGATTCCCTCAAGTGCAGTTCAGTGTGCAGCCTGATTGGCTGTTGTACCAGCTTTGCACCAACCCTACATGCATCCGTTAGCTCTTTCAACAAGAcggggaaaaaagaaatgaaagtctAGCAAATTTGAATCCCTCAGCTTATCATCGTTATCGAGGAAAACTTTATCGCGATACTAATcaatattgttttattgctCAGCACTAGTTTTTCATCAGTTTGCTCCACGACCTGAACACTGCCTTACTGATCTCCAAAATCAAACCATATTTCTACCATGTTCCTGTACAAACTGGCCTGAAATTCAAAGAAGTACATTCTTATAGACCAGAGGTATTCAAACTTTTTTGAGAACTCGCACGTGCCCCCCTCAACAGAACCCACATACCCCCACCTCATAATATAATGTCTTATAATACAGCAGAACAATGGAAGGTGATAACTGCAGTGaacattaagtaaaaaaaaacttaaatatatcatttatgAACTAAAATATATAGGACAGACtgatattgttatttatttagacttttaaaactgtaaatagaCGTCTTTATAGAATGTAcatcatattaattataaaataaatctaccTAATAATTGTGATCTTCAGTCTAATATCTCTGAGAATGGATGGAATATTATCGGGCGACTGTAAATGCGCAGGAGCACAAATATTCAGAAGAGGAGATGGTGTGACCGCAGTGCAGAAGAGCAAGCAAACAGAGTTTAAAATCTCTCTCCAGTTATAATCACCATCAACATTATTTGTGAAgtgttacattttacaattcatTGTAGgcatatttataatgtatattaaaaaattatttaacatacaagattctgcactatttctaggtccctatttaaatgtaagcgaATGTGTGacattgaccatgttaactgctttgtacaaacggtcagattttcctcatgcctaatctctttaTGTCAGATGACACTCCAATGgatctgatctaaaatggatcataaggttttgcaaaaatttgtggaatccatgccagctcgagtgcacactgtcattaaagcaaaagggagacataccaaatactaagaaaatctaaaattcatttaaatatttcaaagattctacttttcattcAAGTTGTTGCcagaaatatactgtaatttgtACTGAAAATTGCAATTGCTGTATTacattagaaaagaatgcaaaatagaaggaTTTTCACTACTGGGCTGAGACTTATGGACCCACtgtgtgtatatctatctatctatctatctatctatct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74145 lncRNA upstream 106733 11215155 ~ 11215743 (+) True G62554
TU74139 lncRNA upstream 128625 11177029 ~ 11193851 (+) True G62549
XR_004577937.1 lncRNA upstream 138742 11182770 ~ 11183734 (+) True LOC117596983
XR_004577928.1 lncRNA upstream 299680 11020133 ~ 11022796 (+) True LOC113540371
XR_003404022.2 lncRNA downstream 92255 11418007 ~ 11421178 (+) True LOC113540368
TU74234 lncRNA downstream 111777 11437529 ~ 11437855 (+) True G62618
XR_004577942.1 lncRNA downstream 137331 11463083 ~ 11464606 (+) True LOC117596988
TU74121 lncRNA downstream 264974 11590726 ~ 11605230 (+) False LOC117596972
TU74113 lncRNA downstream 276696 11602448 ~ 11605230 (+) False LOC117596972
XM_026936804.2 mRNA upstream 63814 11255938 ~ 11258662 (+) True cideb
XM_026936802.2 mRNA upstream 77899 11240674 ~ 11244577 (+) True dhrs4
XM_026936755.2 mRNA upstream 130482 11183735 ~ 11191994 (+) True ajuba
XM_026936767.2 mRNA upstream 151136 11159921 ~ 11171340 (+) True mmp14a
XM_026936763.2 mRNA upstream 185050 11130175 ~ 11137426 (+) True LOC113540324
XM_026936747.2 mRNA downstream 57682 11383434 ~ 11400606 (+) True si:dkey-183c6.8
XM_034303244.1 mRNA downstream 114336 11440088 ~ 11445185 (+) True LOC113539902
XM_034303260.1 mRNA downstream 128178 11453930 ~ 11462747 (+) True LOC117596977
XM_034303231.1 mRNA downstream 142198 11467950 ~ 11582422 (+) False LOC117596971
XM_034303232.1 mRNA downstream 223848 11549600 ~ 11582422 (+) False LOC117596971
TU73719 other upstream 659069 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 756752 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 790948 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 791432 10530971 ~ 10531044 (+) True trnan-guu_13
trnak-cuu_19 other upstream 827006 10495398 ~ 10495470 (+) True trnak-cuu_19
XR_003403980.2 other downstream 319150 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU74787 other downstream 966762 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 2092625 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 2145017 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 2232871 13558623 ~ 13562266 (+) True cited1

Expression Profile