RNA id: TU74256


Basic Information

Item Value
RNA id TU74256
length 222
lncRNA type inter_gene
GC content 0.59
exon number 1
gene id G62640
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11610836 ~ 11611057 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCTTCTGCTCCGCCGTGACTGCCTGCTCTGCCATGGCTCCATGCTCCTCTGGATCTGACCTGGTGGTCCCCTGGCCCTCCACTGTTTCACGGTCTGTCACTGCTCCATGGCCCTGGCCCTCCACTGTTCCACAGTCTACCACTGTTTCATGACCCATGGTCTTGCCCATTGTTCCACGGTCCATGTCATTATCCAGATCCTGTTCCCCTTCACGGGCCTgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74255 lncRNA upstream 1567 11608756 ~ 11609269 (+) True G62639
TU74121 lncRNA upstream 5606 11590726 ~ 11605230 (+) False LOC117596972
TU74113 lncRNA upstream 5606 11602448 ~ 11605230 (+) False LOC117596972
XR_004577942.1 lncRNA upstream 146230 11463083 ~ 11464606 (+) True LOC117596988
TU74234 lncRNA upstream 172981 11437529 ~ 11437855 (+) True G62618
TU74260 lncRNA downstream 44410 11655467 ~ 11705262 (+) False si:ch211-200p22.4
TU74270 lncRNA downstream 64256 11675313 ~ 11675695 (+) True G62654
TU74587 lncRNA downstream 251576 11862633 ~ 11863683 (+) True G62932
TU74622 lncRNA downstream 301793 11912850 ~ 11913106 (+) True G62967
TU74638 lncRNA downstream 323772 11934829 ~ 11937759 (+) True G62983
XM_034303238.1 mRNA upstream 10485 11590715 ~ 11600351 (+) True LOC117596972
XM_034303232.1 mRNA upstream 28414 11549600 ~ 11582422 (+) False LOC117596971
XM_026936806.2 mRNA downstream 2711 11613768 ~ 11619677 (+) True vbp1
XM_026936969.2 mRNA downstream 20919 11631976 ~ 11637570 (+) True zgc:162171
XM_034304105.1 mRNA downstream 33844 11644901 ~ 11692597 (+) False si:ch211-200p22.4
XM_034304104.1 mRNA downstream 33845 11644902 ~ 11705336 (+) False si:ch211-200p22.4
XM_034304101.1 mRNA downstream 33846 11644903 ~ 11705336 (+) True si:ch211-200p22.4
TU73719 other upstream 947429 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 1045112 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 1079308 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 1079792 10530971 ~ 10531044 (+) True trnan-guu_13
trnak-cuu_19 other upstream 1115366 10495398 ~ 10495470 (+) True trnak-cuu_19
XR_003403980.2 other downstream 33845 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU74787 other downstream 681457 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 1807320 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 1859712 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 1947566 13558623 ~ 13562266 (+) True cited1

Expression Profile