RNA id: XM_026935951.2


Basic Information

Item Value
RNA id XM_026935951.2
length 9659
RNA type mRNA
GC content 0.43
exon number 19
gene id si:ch211-200p22.4
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11644901 ~ 11705336 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTCGCGCGCAGCCATTTTGTCCGGAGCTGCTCTTCTCAAACCGGAATAAAGCGAAGGCGAGTGGAGGAACGCCGTTGGAGGGGGCTGATAAAACACACTCCCTGTCGGAATTTCTCCACCTATTGATCCAGGACGGAAAAAgcccacattttttttctcgTGGTGGTCCTACAGCTGGACTAGTGGACTTCCTTTCACAGATGCAGGTTGGATGTTAGGTTTGAGCGGCTGATCAGCTGTCCGAGATCTAATGTTAGATCCTTCAGGTTCCAACTCAACACAAGATTTCCACTTTCACTTCTGATCTCCGTGTGTGTTCGTTACAGGTTAGCTGTCATTCATGTCAGCGAAGGGTTTGAAGATAGCATAGTAGCTAGCAGGAAGAGTTTGAACAGAGTTAGAGACCTGAGGGAAGCCGAGAGATTAGCCGGGTGGCTGCTGTTAACTGGAACCTGTTAACTAGCTAAACTAACTAGTTCCCTTTAATCCGGCATTATTACAGCGAGCTAACAACTTGCTAGTTACAGGTCTCTGTGCATTCCTGTGGTCAGGAAGCGACTTGCTAGCTCAGCAAACACTCGCAGGTAAATACTGAATCCTTAAATCCTCACTAATTCGAGTCAAAGGACAGACTTGTGGAAGCACTTTCCGTCCTTTCTTGGGGTACGTGGCATTTTCCTccctatctctttctctttttctgacCTGGCAGGACGGATAGCTAGCTATGTCATTTTGCAATCTTCCTATATGCTCAGATTTCACCATTAGGTCCTGTGCTCGGGGTGAGCGCTGTTATGGTTACATTAGCTAACATCAGCTCAGTCATTCAGTTCATCCGGGTGTAACACTGACACTTGGCCTGATATTTGTACTAGATAGGTAGCTAGATTCTTTTATATTACGACGAAATACACGATCAAGGGTGACTGGTTTAGTATTTAGCTAAtcttttggggtttttttttaaaaaaaaaattatatatatatataagcagtCACTTTACTGACTCGAGGTTTTGCTAAATCCGCTCATATTAGTGAGCTGTTAAGCTATCTggatttgagagagagagagagcgagagaaagagagacagactcgTCCAGCTGATCAGTAGTCAGTGTTGAGGTGAAGCATGTCGGGACAGAGCATCACGGACCGCATCGCGGCGGCGCAGCACAGCATGACCGGCTCCAGCATCAGCAAAGCCGTGTGTAAGGCCACGACTCATGAAGTGAGCGGCCCCAAGAAGAAACACCTGGACTaccTGATCCACTGCACCAATGAGATGAACGTGAACGTGCCCCAGCTGGCTGACACTCTGTTCGAGCGGACGGCCAACAGCAGCTGGGTGGTGGTTTTCAAAGCCCTCATTACCACACACCACCTAATGATGTACGGCAATGAgCGTTTCATTCAGTACCTGGCCTCGAGAAACACTCTCTTCAACCTGAACAATTTCCTTGATAAAGGTGCATTGCAAGGCTATGACATGTCCACCTTTATCAGGCGCTACAGTCGCTATCTGAACGAGAAGGCTCTGTCCTACCGGCTCGTAGCTGTCGACTTCACCAAGATGAAAAGAGGTATTGATGGAGTGATGCGCACCATGAATACAGAGAAGCTGATCAAAACTCTGCCCATTATTCAGAACCAGCTGGACGCTCTGCTCGACTTTCAGGCCAACCCTAATGAGCTCACCAACGGTGTGATCAACGCTGCCTTCATGCTGCTTTTTAAAGACTCCATCCGTCTGTTTGCCGCCTACAATGAAGGGGTCATCAACCTGCTGGaaaaatattttgatatgaAGAAGAACCAATGCAAAGACGCTTTGGACATCTACAAAAAGTTCCTGTACAGGATGACCAAGCTGTCTGAGTTTCTCAAAGTAGCAGAgCAAGTTGGGATTGATCAGGGTGACATCCCAGATCTCACTCAGGCTCCCAGCAGTCTGCTGGAGGCTTTGGAGCAGCACCTGGCCTCTCTGGAGGGCAAGAAGACTAAAGAGTTCTCTGCAGACAGCAGAGCCACCACTCTGTCCAGCGCCGTGTCGTCCCTCTCAAACACAGGCATGTCCTTCACTCGTGTGGATGAAAAGGAGAAACAGCAGGCTCTAGAGGAGGAACAGGCCAGACTGCAGGCTCTCAAGGTGGGCTCCAGCTTTCCTGACCAGCGCCTGAAAGAGATTAGCATGCAGACTCCCTCTGCCTCACCTGCTACTCAGTCTGCAAGCAGTGCCAACAACCACAGTGCGGCAGTGGATCTGTTCTCCAACCACAGCACCACCCCTGCCCCTGTCACCAACAGCATGCCAAACCTCACCAGCGACCTGTTTGACCTCCAGCCAGCTTTCATCCCTGCCGTGCAGAGCACTCCATCCATATCCACAGCCAGCAGTGCCTGGGGAGGTCTAGAGAGCGGCGTTCCCCAGCAGGCTGCTCATATTTCCACCATGAATGTAGATTTTGATGCAGTGTTTGGGACTCAAGGTGCCAATAACGATGTGAAGCCAGCAGCTGGTTTTGATTCTCTAGGAGACCTGTTGAAGCCCACTTTACCAGCTCACACTCAGGCTCCCATGATGCCCCCACACACAGGAGGCAAGCTGTTGGCCAACGACCTCGACTCCTCCTTGGCCAACCTCGTGGGCAatcTGCAGTTTAGTGGATCATCAGTCAAAAAACCGGACATGCAGTGGACACAGCCTGGGGAGAAGAAGATGACCGGCGGCACTAACTGGCAGTCCAAAACCATGAGCAGCACGACTGCCTGGAGTCCTGCCCCAATGCCACCTGCTCCCATGACTGTGCCCCACatgGCTCCGGCCCCCATGGCCTTCCCCATGACCACACCTCAAGTGCCTGTGTATGGAATGgtcCCTCCTCAGATGGGTCAGATGGGAGGGGTTCCAGTGATGACGCCACAACCCATAATGTACCAGCCTGTCCTCAGATCTACCAACCCATTTGCTCCAGTTCCTGGagctcagATGCAGTTTATGTAGTAGCGCCGTGTAGCGGCGTGCCAAACAGGATGGCAGAATGACCCACCGAGCAAATCGAGCAAGAGAAGAGACAAAGACACCACCCACCATCAGATTCagggagctggaggaggagtGCTGAAGCgtatgaagagagagagaaatgcaaaaGGGAGGAGTACAGGAGATGCGAGAACATTATTTTTGCCAAGACTCTTCACATTACTATCTGACAtggctttttctctttctcacacacacacacacacacacacacacacacacacacacacacaaaccacatcacAACAGGGTATCAAATCAGCCTGTTactcattttttattgttttttttttttttttttttttttaatttttggctTGTCAGTGTTTTATACGTCACAGGTTCATTTGATCATGTCCTGAGAATTGTGTTTTTGGCGAATCATTTGTTTCTAAATCAGGTTTCATGTCTGGAGTGACGACATTGCTTTGCTATGTTCCTAAGATGGCCCTGAGCACTGTGTTTGGGTTCGAGCTGGGTGTGGAGGCAAGGGCAGGACGCTGTTCTCCACCCAGGCTAGTCCTGTCTGGTTAGTCCCGCTCTCGCAGCATTAGACACGTCACTGCTTTTCGTGAATGAATCATTGTTGAGCTCTTTGGTTTCAGTACCGTTGTGAAGCgagccaaattttttttttttaataataatctccAGTAAATTGTGATGTTTGGCATTTCCAAGCACTTTAACTTAGTGTGTATGGTTGTTGCTGAATTGTATTCATACACTGAGCTGGTCTCTGCATGTTTGGATGTGTTTTCAATAATTCAGACACCAACTTTTTTGAGATCTTTAGTGAACTTGTTATTGGTGGCAGCCTTGCTTTTCGGTTCAACTTTAAACCGTCTGTAATCTTTTCGTCCTGTGTGTTTGCAGACGGTTGCATTGGAAAGCCATATAGGCACTCCCACACTCAGGCTCTTGTGCTCTTGATTTCATTCCTCCTGCCAGTTCAAGAAAATTGTAGTTCCTCTGCTTGATCCTCTGCCCTTCTAGACTAAATATGTCTGTATTGTAGTCTAACTAGTGCGACCCACCCCGTGCAAATGAGACATTAGGGAGGCCAGTCCTGTTAGACCTTTTATCTAAGCGCTTACATGTGACCTGTTctatcattttcagttttatataCGCCTGAAAACAGGGTCTTAGCTTCTTGTTAATACTGATATTAGACAGGACATATAATGCTCTTTTAAATGTTGATTGAAAAGACTTTGTTTTAAGAAACAGGCCTCTGAAGTTTGATATCAGTATTTGAGTAATTTagaatatttttcaaatataagGTAAAACTTTTTTAGCcaagagtaataaaaaaaacaaacaaactggcaTGCACATGCaaatatgtgtggcagcctgggaaaaacTATTCACATGGTGAACTTTTGAccttttctactatatatatagttgctactatagaaaactacaggttttcctgaactgaaatatgtttctcttctCCTTGTATCTCAACCAGAAGAAAAGTTGTAGGATTTTAAAATCAGGTTccctccaaaagtgaaaaggctgaaaatgacattaaaagattTCATTCCGACTGAGGCGCCAgcacatggctgacattttgacagccggtatctgattacaaactgaattgattaggcttatggcTGTTTTGCTACAGCATGCAACTtttccaacaacttgatcaaatcatGAGATGTTCACAAACTGGCTCCTTATTTAATAATATCTTTTCAGGAAGATACCCAAGGCAAGATTAAATAGTTTTGATGAACCTTGTTttagtgaaaatatatttgttttgagatgtcaaagtatgttaaaggcaggaaaaaaaaaaaactaagagaTGCTTTCCCACCaataatattgcatttttcaGCCCGGGGGGGAAGTGGAGAAACATTGATGTGCAGCTTTGTCTAAAACGCGACATGCTATGATTTCGAGCTGCCAAtagatgtttttgtttgaatttcaaTATGACACGGTATGCAAGCTCTAGGAACAGGACTTGTCGTGATTTGTGCATCAGTTATATTCATCTGAACGCCATGAGTTCCTTAAACGAAAGCAGACGTGATTTACTTTAACAGCATTCTGCAATTATAGCTGCCAAATTAACAGTTGTGATTTCAATTTGCTGTGAACATATGCTATCTCTTTTACACCCCCTCCCACTTTCCAGGCACGTAGCCATGTTACAAGCCTCTCTCTGGCTTTGGGGGGGAGTGAAGAACTGTGTGTGCCAATATTATTCAAAGAAATTAGTGCCTGATATTTATTGCCaagttttctttttatctcttgGATAAAACAAATATCTGCAATGTGCGAGTGTTGTCATGGAAGCGCTGGCAAAGAATAGTTTCCGTGGAAGAGGCAGCTGATGTCCGTTTGAAGGGCTTTGTTTTTAtgctttctgtctcactctagTCACTATGGTGAGCATAATGGCATGTGAGGTCGAACTCCAGCTCTATTCTTTACTCTTCTGCCGTCTAGGTGATAATGTGATCCTTATTTTAATAAGCTCCTCTTTGCCTGTTAGTCATTTCtctggaggaaagagagagaagacgAGGTGGCAGGATGGCTACAAGCTGCTTAGGCATGAGCAGGGAAATGTCAGTCATGCGCACGTAAGCGCATATGCATATATCTGTGTGTGGGACTGTGTGGGAGCTCTCCTCGGGTCATCTTGCATTCAAACTAGCAAGCGACAAGTACATGTTTCATTCAGTCTTTTCGAATGCAGCGAGACTAAATAAATCACTGCCATGCACTTAGTAGTTTCTCTCATTAATTTGGTGCACACACCCTTTACCCATGATTCACTGACTCTGaattgaccaaaaaaaaaaaacttagaagAGTGGGGTGATGTGTATTTATGAAAGGAGCCTGTCATTGGCTGGGAGAACTGACTGCACTCTGATGTCACAAAGCAATCCTGGGATTATTGGGAATCCTCAGAATCTACTTCACAAACAAGATTCCCTTCTTCATTCAGTGGGTCAGTGTTCTTGAAGTGTACAAACCAgtaaaagtacttttttttttaaagcaagatGGACTCatgtttgtgggtgtgtctgtgttgcTTAATTGCTTGGGGCGCATCGGACAACCTGCACCTTAGTGACGGAGCATTAAAGCACCAAATCTAAATGATTGGCTCCAGTAAATTCAGACTCAGTCATGACCACTGACCGTAAACAAATGGCCGCTGGATGTTTTGTCGCagtgtgaatgaatgcatgGTGACGATGCCCTGACGTCCATCACCTGATCACAGTGAGAAGGCTGCTGTTAATGTTTGCACATCTTCTTCCTTCtctttggtattttttttttttacacacagacCAGTAATTTTTATAAAAGGAGCCAATTACCCAACAATTCAAACCCATTTTCCCGGAATGTAGCAGATGGAAAATAGGCGACACgcaatttaaaaacagcagAGTGTGTTTAAGCAgcatgtctgtttctctctacaTTGCTCTACTACTACTATATTATCATCCCCTTTCAACATCGCAGTGAAACgccgccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagatgtgcgTCAGTAACTGCTCTCAAGCACACTGAAGTGATCTCACACACGTGCTACTGATCTGATTGGCTTGTATAACAAGGTGTGCTGAGGACCCATGGGTATTTCCTCAtcgtgtatgtgtgcgtgtatgtgtgcgtgtatgtgtgcgtgtatgtgtgcgtgtatgtgtgcgtgtatgtgtgcgtgtatgtgtgcgtgtatgtgtgcgtgtgggaATTACGCTCATGGGCCATATGAACTTTCATGATGATCTTCAGAACTGTTGGTTTTTTTAAAGGAGCACTTTGTCATTTTAGAGCCTTCTACGGTTGTAATAAAAACCCTGACAAGTATCCCGTACCCTTAACTGACCCCCTGTGAGTTATCTTTATAGGAAAAGCAAAAGGGCTGAGCAGCTCTGCTTTGGGGCGGAGCTAagttctgggccagaaaaatataaaaagaagcCTGAAACAGAACAGAAAGTAGCAATACCTACAatagtgaaacaaaaaaaataaggcAATATTGTGAGTGCCAGTTTTGCAAATGGTATGATTATTTCAGGTCCAGAAACACACAAATTGTGAACTGCTTCTTTAAAGATTTGAGCGTGTTTTGGCATTTTATAACATCGTTTTTCTCTGAGTGTTTTTCAGGCTCTTTTCTATCTGTTTGctctgttttgcatgtttttagcAGCTTTGCGTGTTTTGTGTAATGAGGTTTGTGTGTATCTTGCACTTCGGGTTTTGTCAAGTGAAAGTAGCGagagctcagtgttgtgttgatgtttttttttttgtcaatagaGTCAAAAGCATGATCTTATCtgtagttttgtttatttgtttttgtcaatGGAGAATGGTTTAACGAGAATTTGAATGTCCTAATGACCTTTACTCCTTGTGATCTGTTTGCTATTTAGCAATAGATGTACTGTTCATGGCTCATATTGACTTTGGGCAGCTGAAAAAGGATATTTGAAATGACCAGACATTGGAAACATCTATGTTTCTGGTGAAcagtaaagacacacaaaacaacTTCTCCTGCCTGGTGATGCTCCTGTGTGTAATCTGATATAAGTGCAAATAAGACGTGGAGTAATagaaatacattatatggccaaaagtatgtggacacctgaccgtcacacccgtatgtgtttcttccccaaactgttgccacaaagctgaaagcacacaattgtatacaaagactttgtatgctgtaacgttacaatttctcttcactggaactaagaggcacaaacctgttccagcatgacagtgctcctgtgcacaaagtcagctccatgaagacatggcttgccaatTTTGGTGTGGAAGACCTCGAGTGTcctcacagagccctgacctcaacacctttgggatgaattagaactgcgtgccaggcctcctcacccgacatcagtgcctgacatcaCTGATGcgcttgtggctgaatgggtacAAATCCTCACGACGCCTTCACTGAAGAGAACTCTGTATTAACATAACTCTATATTAatgctcaacaagcacatatgggtgtgacggtcatgtgtccacatacttataGAGTAGGAACTGGGTATAGCAGCTGCACCAAGAGTATGTGTCCTTTTTCTTGTTTAGCATTGAGTATGTTGggggaaatgtttttatatggTTCCACTTTAGGTTAAAAAttgaaatgggatgtttttACCTTTAACACAAGGGTTAAAGAGCTATTACCTGATATGAATTATTTACTAAATGTATTGAAATTAATAGGAAAAGTGGGAAAGTCTGGACGTGGATTTTGGTTTAGGGTTTGAaccaacataataataataataataataataataataataataataataataataataatagtttgatttatatagcacatttcttATACTCAACGtggctttacaaaaaaaaacaaacatggatgaACATGTCATACCAGAGGTCAACGAAATTCTCTGACCTAGCCATAATAGTTATGGATTGTTGGATTGTTACAAAGTCAGACTTGGGCTGAGATTACAGCACTTATTGCACTCCTGTTACTCTGCTTCCCTCTAGTGGACATCAGCAGTATTGCAACACGTTTGCTGTGTGGCTTTGGGATTTCactctgtgtttgtgctgtgtaTTTTAGGCAAATCTATTTACTAAAAGCTCTGAATCCTCTCTGACGTGAAGGCATGAAGCCAAAGGTGTGTTAGAGTCAAACTGAGTGAGATGATCTCCTTTTACTGTCCATCCTGTGTGTGATACGAGGGAGGTCTGTAGTTAGAGCCACGGGCAGCTCTAGGTCGTCCAAACCTCCTGTGCACATTGTCAAGCCCAGCTTTCAACCTGACCTCAGTGCTACACCTAAAAACGCAGACAGGAGCGTTCCCCAGAGTCTGAGTCTGGAGAGtttatttcatcatatttataCAGGGCTCTTCTCACTTCAGTCATCAGGATGCCtttaaggaaaaaagaaaaagaaaaaaaacaaaacctgtgGTTTAAGTGGTGGTCATTTCTGCCAGACCTTATGCACATGCACgctaccttttttttgttttgttttttaatcttctgtggtttttggacatttttttcctGCCCGATGTAGTCATGTATATACCCATACTCTGCAATTTCCACATTTTATCcctttttattttgcttctgATCTTCTGAACTGGAGATAATTGCctcatatatagatatatagatatatatacactgtcTCTGTGCAAGTGCCGGGGTGGAAGGCTGCAGATTTTTAATTCATCATcgttgtcatcatcatcatcatcatcgatGCCAAAATGAGAGGAAGAATGAGTGGAGAAACCcctttgtacatttttttctatttatttatgcagaATATAAAGATTTTAATACGCATGGTAAATACACGTAACATGAAATCAtggaagtttttgtttttcattttacttcattctttcagtttttaccaaaagaaataaagtcatttttctttcctAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74256 lncRNA upstream 33846 11610836 ~ 11611057 (+) True G62640
TU74255 lncRNA upstream 35634 11608756 ~ 11609269 (+) True G62639
TU74121 lncRNA upstream 39673 11590726 ~ 11605230 (+) False LOC117596972
TU74113 lncRNA upstream 39673 11602448 ~ 11605230 (+) False LOC117596972
XR_004577942.1 lncRNA upstream 180297 11463083 ~ 11464606 (+) True LOC117596988
TU74587 lncRNA downstream 157297 11862633 ~ 11863683 (+) True G62932
TU74622 lncRNA downstream 207514 11912850 ~ 11913106 (+) True G62967
TU74638 lncRNA downstream 229493 11934829 ~ 11937759 (+) True G62983
TU74720 lncRNA downstream 298654 12003990 ~ 12004223 (+) True G63061
TU74814 lncRNA downstream 543327 12248663 ~ 12249788 (+) True G63137
XM_026936969.2 mRNA upstream 7333 11631976 ~ 11637570 (+) True zgc:162171
XM_026936806.2 mRNA upstream 25226 11613768 ~ 11619677 (+) True vbp1
XM_034303238.1 mRNA upstream 44552 11590715 ~ 11600351 (+) True LOC117596972
XM_034303229.1 mRNA upstream 62481 11570128 ~ 11582422 (+) True LOC117596971
XM_026935954.2 mRNA downstream 2123 11707459 ~ 11716739 (+) True zgc:92429
XM_026936200.2 mRNA downstream 113430 11818766 ~ 11824148 (+) True gpr185b
XM_026935824.2 mRNA downstream 380843 12086179 ~ 12093053 (+) True si:dkey-171c9.3
XM_026936836.2 mRNA downstream 394469 12099805 ~ 12122603 (+) True tnfsf10l
XM_034303321.1 mRNA downstream 493006 12198342 ~ 12206875 (+) True tifa
TU73719 other upstream 981496 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 1079179 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 1113375 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 1113859 10530971 ~ 10531044 (+) True trnan-guu_13
trnak-cuu_19 other upstream 1149433 10495398 ~ 10495470 (+) True trnak-cuu_19
TU74787 other downstream 587178 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 1713041 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 1765433 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 1853287 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 2000240 13705576 ~ 13719454 (+) False gc2

Expression Profile