RNA id: TU74459


Basic Information

Item Value
RNA id TU74459
length 975
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G62813
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11557584 ~ 11607947 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtaaatgatctttattaataaacagaCTTTAGGATTAAAATGATTGGtttatgtaaaaaaacaaacaaacaaacaaaaaaacaccaggtATTAAAATAAACTGCATACGTGTCATGTAATGGAGGCTAAGATGGATGCAATTGCAGGTGACAGAGCTTTAAGGAAAAACAGTTCAGACAATCCAAAAAACACTAGGAAGAATCAAAGTCAAAAACAGGCTTATGTCAGGTGATCAATAAACAGGATGTACTAGGCAAGGTAGAAAACGTAAACCAGGGAACAAAGTCAAGGTCAAACCAGGATACTGAAGGCAGGCAAAAACACGCTTGGTAATGTCAGAAAAACAGGTAAACTGAGTGTATACTATGCAAACATGCATTTTAAAAGGGAATTATGTATTTCTATGAATTACCagaaaaagttaaatatttatttttattctcaccATTTAATAGATGATTAAATTTgtgaagtgaaaaaaatcattcagtgttaaatacagGAGAGATGATCAGTGGCACTGAATTTTTGCCTCCTTCATTTAAATAAGGACTGAAGTATGGATAGAGTTTCTCAGTGAAAGACTGACCAGTGAAAGAGTAGATATGAGAGCTTGATTTCACATCATAAAAGGAGACCAGTCCCTCCTCATAATCCACAAACACCCCCACCTTCTCCaccttctctctcagtgtgaggGGGACGGCGGGACCAGCATTAGCACTGTACTGATTCTCATTCCTCAACCACACAGTCCAGAATCCATTCTGAGGTCTCAGATTAATCTTCCCCTTTCTGTTAATGGACTCTGTGGCGACGCCGAGATCCCAATCAGTTTTGCCTCTGACCTGCACCTCATAATAGAATCTCCCTGAGGAGAAACTCTGCTTTCCcacaacacagacacattcattAAACCTCTGTGGTGTATAAGGGAGATTCTGTCGTGTGTCTCCGTGTGTCACTTGTTTTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74432 lncRNA downstream 10296 11451438 ~ 11547288 (-) True G62791
TU74373 lncRNA downstream 86537 11441117 ~ 11471047 (-) True G62734
XR_004577935.1 lncRNA downstream 94546 11460070 ~ 11463038 (-) False LOC117596982
XR_004577936.1 lncRNA downstream 94546 11460070 ~ 11463038 (-) True LOC117596982
TU74413 lncRNA downstream 154563 11402269 ~ 11403021 (-) False si:dkey-183c6.7
TU74482 lncRNA upstream 1601 11609548 ~ 11609774 (-) True G62830
TU74483 lncRNA upstream 1974 11609921 ~ 11610121 (-) True G62831
TU74484 lncRNA upstream 3173 11611120 ~ 11611657 (-) True G62832
TU74466 lncRNA upstream 48683 11656630 ~ 11705457 (-) False G62817
TU74465 lncRNA upstream 55051 11662998 ~ 11705457 (-) True G62817
XM_034303833.1 mRNA downstream 22341 11524826 ~ 11535243 (-) True LOC117597110
XM_034303241.1 mRNA downstream 37933 11509731 ~ 11519651 (-) False LOC113540344
XM_034303239.1 mRNA downstream 38659 11509731 ~ 11518925 (-) True LOC113540344
XM_034303240.1 mRNA downstream 38930 11509731 ~ 11518654 (-) False LOC113540344
XM_026936779.2 mRNA downstream 125332 11426298 ~ 11432252 (-) False syt4
XM_026937343.2 mRNA upstream 14938 11622885 ~ 11626845 (-) True rab39bb
XM_034303303.1 mRNA upstream 109398 11717345 ~ 11796600 (-) False si:dkey-172j4.3
XM_034303300.1 mRNA upstream 109398 11717345 ~ 11796600 (-) True si:dkey-172j4.3
XM_034303301.1 mRNA upstream 109398 11717345 ~ 11751713 (-) False si:dkey-172j4.3
XM_034303299.1 mRNA upstream 109398 11717345 ~ 11743538 (-) False si:dkey-172j4.3
TU74378 other downstream 22571 11533764 ~ 11535013 (-) False LOC117597110
XR_003404120.1 other downstream 343162 11214322 ~ 11214422 (-) True LOC113540752
XR_003404119.1 other downstream 344650 11212834 ~ 11212934 (-) True LOC113540751
XR_003404121.1 other downstream 348751 11208733 ~ 11208833 (-) True LOC113540753
TU74341 other downstream 375271 11177711 ~ 11182313 (-) False mrpl52
TU74889 other upstream 639327 12247274 ~ 12249056 (-) False si:dkey-165a24.9
TU74900 other upstream 664271 12272218 ~ 12277612 (-) True LOC113539775
TU74899 other upstream 664425 12272372 ~ 12277612 (-) False LOC113539775
TU74901 other upstream 664425 12272372 ~ 12277669 (-) False LOC113539775
XR_003404098.1 other upstream 1596326 13204273 ~ 13204462 (-) True LOC113540725

Expression Profile