RNA id: TU74638


Basic Information

Item Value
RNA id TU74638
length 2137
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G62983
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11934829 ~ 11937759 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taaagttgaaataatgacaaGACAACTCAAGTTAATTtgaaatgagatattaagtcaaaaaaCGAGATATAAAGTTGAACTAATGGGATAACTCAAAATAATGTGTCTAAGTCAAAATAAGAAGATATTAAGTCATCGTAATGAGACATTAAGCCAAAATAATTTTCAGGACCTCAGTTCTGACTGCAGCTCAGTGCAACGTCTCATGGCTTTTACCTCACACACAGTCATAGCCACAGAAGCCATTCTATTGATTTTTATAATGGAGTTTACTATAGATCTTCGGAAACTTTCAGCTCCACTGCTTCACCTATAGGAACCTGTTTCCATCCATCCTTAAGATGTTTGAGTCTTggagaaaaaagcagaaactcATCATTACACTTCAGAGGGCCTCACTGAaaacatctctctttttttcttcctttttcttcccCCTCTCTGTAACGTGTGTAGGTCGGGTTCCTGATATTTTCTCCCGGAAAAAGAAAGGCAGAAAAATCAACAGCAACCTCCAGTCAGCCTTCAGTCACGGTGAGGACTGGCACCTCCACAACCAACTGCACTGCgcgcgaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaggggctgTGCAGATTACTGCAGTAAAACAGGATTACATAAAACACCCACAGACATGAAGTCTCAGTGGTGCGGAGCACaactcactctcactgtgtgtggAAATGCCACTTCTGTTatttaaacaacacacacactcgcaagGTAGAAAaagcatctttctctctctctctctctctctctctctcacacacacacacacacacacacactcacaaactcacacacaaacacacactacagctacAACAAGTCATTCCCCCTTCCCCTGCTAGTGTATGGACAGAGACCCTGGGAGCTTGTCATGCAACAGCAGCCCGAGCAGACTTCTTGTCATATTCACTGGCccgtgacacacacactgacacacacatgcatgcacacacacaaacacacacacaaacacacaaacacatcttcAGTGTGGCTCACAgagtttcttctttctttctttcagcttgtcattttctttctttcttttctttctttcagcctgtcattttctttctctttctttctttcagcctgtcattttctttctttctttcttcacatgACTTTCTTTCCGTATATGTGAGCAGTGGCATCAGCTCACACATCCAGCACATTTCTTTCTGCGGTGCTCCACAGCAGACTATAAGGGCTGCTTCTGAGAGTCGAACACTGATGTAAGGACACGACCCTGACTGAAAcagcagagggagagaggagaaagtCTAAGTTTTTTCTTCATGTCACTTTGAAGACTGTGCAGTATGGAGGAAACAGGGTGTaaaaactctgtaaaaaatctttaagaaaaaaataaaatgtaaagtagCTGAATAAGTCATGTGCATGCGGAGGtctctttttaaacaaaaggataaaagaaaacaattctTGTATGACTGCTGgttgaaaggtttttttttcttaaaaagcaGCGTATTAAGCACAGACTCCACAGTAGCTTCATCTAATGAATGTTATATTAATCCGAGTGCAGTCTTTAGATTTGTGTAAAcaaaagagaaattaaaagaCGATCATGAAAACAGCTTCTTCTAACCAGGTTCCGCTCTCGATTGTGctgaatttaattaaagaagAATAGTGTTGCGGAACACAGCTCAGTGTTTGAAATCAAGGCTCCTTTTTACTGGTTACAGTAATAATTATCTGCTTCCTTTGTGGAGGTCTGGCACTTCTTCACTTCTAAAGAAAGCTTACTGCATGGCAGAATTACATAAAAGGAAGGAGCCTCGttcaaaactttatttaaacgCCCGGCTTTTACCTACTCGCAGCTGTAAATCTTCTTTAATGCTCGAGcaacgcttttttttttcatttcacaaaTGAAGTATGAAGGTATTATGAAAATGGCTGATGATCCATTGATGGTGCAGCTCTATTGGCACAGTGCTCCGTCAGTAGGCTGGTGTAGTTATTGGTAACTCGACGTCTTGGAGTCTCCTGGCCTCCACATTGCAGGCGCTGTGAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74622 lncRNA upstream 21723 11912850 ~ 11913106 (+) True G62967
TU74587 lncRNA upstream 71146 11862633 ~ 11863683 (+) True G62932
TU74260 lncRNA upstream 229567 11655467 ~ 11705262 (+) False si:ch211-200p22.4
TU74270 lncRNA upstream 259134 11675313 ~ 11675695 (+) True G62654
TU74256 lncRNA upstream 323772 11610836 ~ 11611057 (+) True G62640
TU74720 lncRNA downstream 66231 12003990 ~ 12004223 (+) True G63061
TU74814 lncRNA downstream 310904 12248663 ~ 12249788 (+) True G63137
TU74788 lncRNA downstream 354755 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU74948 lncRNA downstream 417791 12355550 ~ 12357681 (+) True G63241
TU74949 lncRNA downstream 420073 12357832 ~ 12358248 (+) True G63242
XM_026936200.2 mRNA upstream 110681 11818766 ~ 11824148 (+) True gpr185b
XM_026935954.2 mRNA upstream 218090 11707459 ~ 11716739 (+) True zgc:92429
XM_034304101.1 mRNA upstream 229493 11644903 ~ 11705336 (+) True si:ch211-200p22.4
XM_026935824.2 mRNA downstream 148420 12086179 ~ 12093053 (+) True si:dkey-171c9.3
XM_026936836.2 mRNA downstream 162046 12099805 ~ 12122603 (+) True tnfsf10l
XM_034303321.1 mRNA downstream 260583 12198342 ~ 12206875 (+) True tifa
XM_034303320.1 mRNA downstream 261610 12199369 ~ 12206875 (+) False tifa
XM_026936972.2 mRNA downstream 261692 12199451 ~ 12206875 (+) False tifa
XR_003403980.2 other upstream 237534 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 1271422 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 1369105 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 1403301 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 1403785 10530971 ~ 10531044 (+) True trnan-guu_13
TU74787 other downstream 354755 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 1480618 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 1533010 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 1620864 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 1767817 13705576 ~ 13719454 (+) False gc2

Expression Profile