RNA id: XM_026937221.2


Basic Information

Item Value
RNA id XM_026937221.2
length 3503
RNA type mRNA
GC content 0.48
exon number 6
gene id htr2cl1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11862625 ~ 11966903 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCCCACCTGCTTTTCTCCAGTGATAAGGCCAAGCAGGTTTTCTGGACTTTTTGAGCTTGTACTTACTCTGTTTGTGGATCAGCTGACCCTGCCCGCTTTTCACTCTCTCATGATTAACTGCATCTACATCCAAACCCTGTGCGATCTGACAGTTCCCTAGGTATTTTTTAAGGCAACGGCAAAACTATTTTACTAAAAACATCTACTCCAGACTTGGCAGCCTCGGAGGTGTGAACTGCATGCAGGTCACTTCACTGTGAAAAGCGAGCACAGAGCACACCGTGTTTTTCCACCTATACCCTTTATTTGAAGCACAAGCCTAGGTAGTGACTGAGACAGCAGCTGGTCTGTTTACTGATCTCCCCAGTCCAAATGTGCGAGGGAATGGTTCAACTCCGAGACGCCTCTGCACTACCTGGAGGTGCCGTGTATGGACAGCTTCCTCCCAAATGAATATTGTTTCCCAGAACAAGATTGTAATACTAAGTTGAAACCACAATGGACGTCCTTAATTCTATAGACTTTACCTTCACATTGCAACGCCAGTGGGTTGTTCATCGATAATTGGTTCATCGCACCATCATTTTCCAGCACTCACACATGAGTGTGAGGATCTGTCCTGAGCACATCACTACCAGCTAGGGACCAGAAGGTAGAAGTGCCTCTGTTTAAGGATGGGGGCTCCAGCAGGACCTCTGTTGGGTGGCTTCAGCTCTACCACTGCCTCTGTGGACATCAGTGGCTGGATGACCTGGCCTGGGAACACCACCATAAGCCTGAACCAGAGCCTCTTCTGGACCGACCCTGGCACCAACCTTTCCTCCACCTCATCCTCCGGTCAGGGCATAGCCAAGGAAGTGATCAAAGAGAAGAACTGGCCGGCGCTGCTTATACTCATCATCATCCTGCTGACCATAGGAGGGAACATTCTAGTTATTATGGCCGTGTCGCTGGAGAAGAAACTGCAGAACGCAACTAATTTCTTCCTGCGGTCTTTGGCTGTGGCAGACATGTTGGTGGGCATCCTAGTAATGCCCATCTCGCTCATCAACATCTTGTATGACTATGTGTGGCCACTTCCTGAAGCTCTGTGCCCGATCTGGATCTACCTAGATGTGCTTTTCTCCACGGCCTCAATCATGCACCTGTGTGCCATCTCTCTGGACCGCTACGTGGCTATCTGCAACCCCATCCAACACAGTCGCTTCAACTCGCGCACCAAAGCCATGCTGAAAATAGCCGCTGTCTGGACCATCTCTATAGgtATCTCCACGCCTATTCCCGTGATTGGCCTCCGCAACACAGATAAAGTCTTTGTAAATGGAAGCTGTATGCTGAATGAGGAGCGTTTTGTGCTGGTCGGCTCCTTCGTGGCCTTCTTCATCCCTCTTGTCATCATGGTGGTCACATACTGTTTAACTGTCCAGGCCCTTCAGCGTCAAGCCTCTGTCTTCCTCCATGAGGCTAAAGCCTTTTCCCAGCAGCCGGGACCCACGTCCTCGTCTCAGCTGGCTCCACCCCCTGTCCCCTCCCGTCGCAGCAGCCTGAACTGTCTGCGGATCGGGAACTCGCTGAGCCCAGCGACATCCGACAGCATCTCCATGGTGGCTGGCTCGGAGGTACCGTCTCAGCTAAGCTCACCAGCCGTATCCCACGGCCGCCGTGGCATGATGCAGGCCATCAAAAACGAGCGGCGTGCATCCAAGGTCCTGGGCGTAGtgttcttcctcttcctgcttATGTGGTGCCCATTTTTCATCACCAACGTGCTGTCTGTGTTGTGTCGAGGCGCATGCAATGAGCCCCTGCTCTCTGACCTGCtcaatgtgtttgtgtgggtgggCTACATCTCGTCAGGTGTGAACCCTCTGGTATACACTCTCTTCAATAAGACCTACAGGCGTGCCTTCTCCAGCTACATGCGCTGCCAGTATAGCGGAGTCCGGCTCAGGCCTGTGGCCATCCATGTACCGTGCCCATCACAAGCCGCCGTCACACCGCTTCTAATTTGCGTAGACGTTGATCGGAACAGTAACTGCCGCAATGGAGACGGCAACGCACTTCAGAAGCTGGAGTTACCCGACATTGACACTCATCTTGGGATAGAGATGCAAACTGGAGTATCAGCGATATCCGTCAACAGCTGCCATCCACTGGCAGAACACACCAGCAGTGTTTGATTCACTATGGCTGAGCCGTCTGTTGTAGCATGGCCACTAGGAtcatctctgtgtgtttgtgtactccTTTTTACTCAAGGAAGCGCCACCCCAATGGAACCCGCACCAGCACTGGGGCTGGCCATCACCACACTGTAGAATGTATGTTGGCGGAGCACAGGGCGAGGGGGGGGAGATTTACAGCATCAGGGACTAACCTGGTTCACATGCATTAGGACAATCCAGGACACTCTGCACTGTGTGGGAAatctgaagtttaaaaaaatctaaattatgaTGTGTTTGAACAGGTTCAGATATCTGAATGCCATAAAGTGTTGCATGGCTTAATCTAGTTTTTCAATAAAACAACTGGACAGTGTGACTAAGCAACAAGACTTCCAAAGAGAGAGCTCCAGCTCCCTCATGTGGTTctttacaaaaactgcagctggCTTCTGAGATGCGAGAGGAAGAAGGCTGACCTACATTCACTCCCAAAAACTATCAGGCATTAAATTATCTACCCCAAGTACATCAAAGCTttgaataaattacatttccattacATATGTTTGTTTCAATATACCTATCAGGTAGGTTGCAGCCTAGGACTATCTATGCATAATAATCAATGCATTTTGGAATGGCTGGatctggagtgttttatttcatataaccTGACAGATTAGAAGAGAAAGGCCTAAAGAAGTCCTCAGATCGTCTCATAACCACAAACCCACCTGTAATTGCGCATCCACGGCAAATCTGTAGAATGGAATGAAGTTCAAATCTTATAGATCATTTCTAATCAAAGCATGCAGTTTGTTGGCTATCTAAGGTATGGCACCAGAGCTATGCTTTAAATCATGACGTTAAAGGTTTGAGACATGGTTTAGACTTGCATAGAAAATGTTGCAAAGTCATGAGAAATGTCACTCTCTCAAAGGTTACTTCCTCAAGCAATACCACAATAGTTGGAGAATTTTCTCTTGAATGTAATTGTCAGTTATCTAGTGGTGCAAACACACAGGAGAACTACACCGAATGCGTGGAAAGAAACATGATTTCTGCTGTACGGTTATGAAAGccacatctaaaaaaaaacagcaaaacctAGTCTGTCAGATCCAAACCATATGTTCAGAGGAGCTAtagttgtgttgttgtgtaaaatgctgtaaatgcttGTTGTTTTGTGAGTGTGTAGAATTTTAGTACTCAGTATATATTAAAGGTCCTTCATTCAAACTGCCATTTTATACCAAAACCTGTGAATGTTTGTTCAAATCACTTCTCCTCTTTCAATCACTTACACATGaccttcttttgtgatgctgcta

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007626 locomotory behavior biological_process
GO:0007631 feeding behavior biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004993 G protein-coupled serotonin receptor activity molecular_function

KEGG:

id description
K04157 HTR2; 5-hydroxytryptamine receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74467 lncRNA downstream 156970 11698687 ~ 11705655 (-) True G62818
TU74465 lncRNA downstream 157168 11662998 ~ 11705457 (-) True G62817
TU74717 lncRNA upstream 28697 11972711 ~ 11972947 (-) True G63058
TU74721 lncRNA upstream 59993 12004007 ~ 12004319 (-) True G63062
TU74852 lncRNA upstream 123318 12067332 ~ 12123010 (-) True G63174
TU74905 lncRNA upstream 328358 12272372 ~ 12277612 (-) False LOC113539775
TU74923 lncRNA upstream 381446 12325460 ~ 12325671 (-) True G63219
XM_026935801.2 mRNA downstream 2512 11834368 ~ 11860113 (-) False zgc:109889
XM_026935800.2 mRNA downstream 2512 11834368 ~ 11860113 (-) False zgc:109889
XM_026935799.2 mRNA downstream 2512 11834368 ~ 11860113 (-) True zgc:109889
XM_034303929.1 mRNA downstream 12569 11834368 ~ 11850056 (-) False zgc:109889
XM_034303302.1 mRNA downstream 66025 11719062 ~ 11796600 (-) False si:dkey-172j4.3
XM_026936942.2 mRNA upstream 125029 12069043 ~ 12083211 (-) False ccnb3
XM_034303349.1 mRNA upstream 125029 12069043 ~ 12083211 (-) True ccnb3
XM_026936700.2 mRNA upstream 181807 12125821 ~ 12148492 (-) True clcn5b
XM_026936673.2 mRNA upstream 206405 12150419 ~ 12168101 (-) True pygmb
XM_026936372.2 mRNA upstream 226511 12170525 ~ 12182262 (-) True sf1
TU74378 other downstream 327612 11533764 ~ 11535013 (-) False LOC117597110
XR_003404120.1 other downstream 648203 11214322 ~ 11214422 (-) True LOC113540752
XR_003404119.1 other downstream 649691 11212834 ~ 11212934 (-) True LOC113540751
XR_003404121.1 other downstream 653792 11208733 ~ 11208833 (-) True LOC113540753
TU74341 other downstream 680312 11177711 ~ 11182313 (-) False mrpl52
TU74889 other upstream 303260 12247274 ~ 12249056 (-) False si:dkey-165a24.9
TU74900 other upstream 328204 12272218 ~ 12277612 (-) True LOC113539775
TU74899 other upstream 328358 12272372 ~ 12277612 (-) False LOC113539775
TU74901 other upstream 328358 12272372 ~ 12277669 (-) False LOC113539775
XR_003404098.1 other upstream 1260259 13204273 ~ 13204462 (-) True LOC113540725

Expression Profile