RNA id: TU74948


Basic Information

Item Value
RNA id TU74948
length 2132
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G63241
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12355550 ~ 12357681 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGGCTTTAAATTCATCACCATTGTAGACTGATAATATATTGTGTCAgattttcacataaaaaaatcactttaaaatcTTGAAACAATGGAGACACTTGGGTGTGTACTCCTCTATATCTACATAACCGCAGCTCAACataaaggggggaaaaaaagagtaaagTTTCCACAAGGGGGAAACAGGAGAGTGTAATAATTACTGTAGCGCCTGAGAGGAGAGCCACCGCTCGGAGGGAATCACCGTTTAGTTGGACCATGTGAGGAGGGCtgggttttctttctttctttttttttttgtcttttctgctGCATTGCAGATGCAGGGTTTGGGCTACACCtcaaactgacacacacagacatacacacacattttcacaatacGCAACACTCCTCCACCAAGCATCACTCAGATTGGGCACGTTTCCTTTGAATACACTTCATTCAATCTGCTTGGCAGAGCTTGTCTATCCAGGGTACAGCATATAGATTTGTCTTTTGTAACTCTACATGCctcatttatctctctcttttctttcctctctcacacacactcacatggacacacacacataagacaTACCAGGCAGCAACTGTGTTATACACACCCATTTAAGACACTCATTTCTTACTGACGTAGAAACAGAAGGAAGACAATAGAGGGAAGACATGGAACAcatgcgcacacgcacacacacacacacacgttaatcATTCTTTGATGTCATATCTGAGTTATGAAGGAATTCCAATAAGTTTGAGTCAGAAATACACAGAATTCTGATAAAGCAGAGAAAAGTTTAGATATTGGAAAGAAATCAACACCACACATCACAActtcataaataaatgagcaaGAAAACAATTTCTACAACATAGATTGTTTTTTGGATAAGGATCACTGCAAAGTAACTTTCAGGAACTAACTCAAGAATACTAACTCAAGCTAAATGATACACACCTTTTAAGtgaaatactgaataaaaaatatttaaaacataaaatctaCCAATAAGTAGAAGCTGGGAAACACTACACAGCGGCATATATTGGCTAAATGatctcattttacattttatgtagaTTTCATAAACACAGCTCACTGTGTGATCAATGTAAGCCTGTACCTGAAGCTGAAGCAGTGCAAACAGCAATAAGTATAATGCTCCTTTTTTCAGCAGGTGGTGGAGTATTGCAGATGGCACAGCATCATTTTATCATAATGATCTGTAAAATGATCTGCTAGCCGTATGGAtcgttttttaatttttgtcccCAGGAGAGTTTGCAGGAAGAGATTAAAATTGGAGTATTGGGTGTCATTTGAAAGTTTTAGATCAATCTGCCACTTTAGATTCATCACTCTTTTGTTGATGATGCGGAAGATGCCGATGAACATAAATTGGCTGAAACAAATTATGAGCTATTATGTAGTTACtctttttagaatttttttaattaaagttgttttaagttatttttttcACCGATGTATTTGGAGAAGAGCCACAGGGCTGGTAAAGCCATTTTGTACAACCAAAGAgaatttttaaatcacattgtATACAAACAATAACTTATAATtaattgttaatgttaaatttaatgaaatgaaaattaaagcACTCTTGTCAATAATTAATActtaattctttcattttcatttatactttTGGCAAACTTGTAAACCAGAAACCAAGTCTATCATAGCGAGGATCTGAAAGTTAAGAGTTTTGCTTAAGGGCCCAACTGTGGCTCTttggcagtcctgggatttgaccGCACAGTCTTTTGGTCACCAGTTGGGAATCTTTGCTTCTACTGCCCTTTGAAATATGCTAACATCACATTCATTGTGTTTGTTATATTACCTGGCTTTCAAAATACTTACAGTATGCAAGTTAAAATTATTGAACCCAAAAATCTTATTAATGAACTTTGTCTCCATCTACAGTACCAAGGATGAGctctcagatttttttaaaatcaaaacttaCATTTGTTTCCTTCTAGTGTGTTGTGGTGTAATGACCTGTGTAAGTTTTAACTTTAAACTGGGTATGCCAACTTCAATTTTAGTAAATTGATTTGAAAAATACATTACAATAGCAACTCACCTAGTTACTGATCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74788 lncRNA upstream 60427 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU74814 lncRNA upstream 105762 12248663 ~ 12249788 (+) True G63137
TU74720 lncRNA upstream 351327 12003990 ~ 12004223 (+) True G63061
TU74638 lncRNA upstream 417791 11934829 ~ 11937759 (+) True G62983
TU74622 lncRNA upstream 442444 11912850 ~ 11913106 (+) True G62967
TU74949 lncRNA downstream 151 12357832 ~ 12358248 (+) True G63242
XR_003404040.2 lncRNA downstream 410904 12768585 ~ 12772822 (+) True LOC113540557
TU75255 lncRNA downstream 413045 12770726 ~ 12772803 (+) False LOC113540557
TU75285 lncRNA downstream 444213 12801894 ~ 12834330 (+) True G63547
XR_004577946.1 lncRNA downstream 565189 12922870 ~ 12926987 (+) True LOC117596991
XM_026936132.2 mRNA upstream 60417 12292491 ~ 12295133 (+) True si:dkey-112a7.4
XM_034304074.1 mRNA upstream 60417 12292743 ~ 12295133 (+) False si:dkey-112a7.4
XM_034303321.1 mRNA upstream 148675 12198342 ~ 12206875 (+) True tifa
XM_034303320.1 mRNA upstream 148675 12199369 ~ 12206875 (+) False tifa
XM_026936972.2 mRNA upstream 148675 12199451 ~ 12206875 (+) False tifa
XM_034304097.1 mRNA downstream 151193 12508874 ~ 12670541 (+) True nlgn2a
XM_026936982.2 mRNA downstream 151193 12508874 ~ 12667002 (+) False nlgn2a
XM_026936983.2 mRNA downstream 151193 12508874 ~ 12667002 (+) False nlgn2a
XM_026937058.2 mRNA downstream 355160 12712841 ~ 12716732 (+) True LOC113540507
XM_026937059.2 mRNA downstream 355161 12712842 ~ 12716732 (+) False LOC113540507
TU74787 other upstream 60427 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 658255 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 1692143 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 1789826 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 1824022 10531456 ~ 10531528 (+) True trnak-cuu_20
TU75687 other downstream 1060696 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 1113088 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 1200942 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 1347895 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 1898063 14255744 ~ 14269340 (+) False brms1

Expression Profile