RNA id: TU75255


Basic Information

Item Value
RNA id TU75255
length 1974
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id LOC113540557
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12768585 ~ 12772822 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTTAGGACTGAACATAATATTGATCACACCAATGAAGTAGGCTAATAAGACATCAGACATTTTGAATGTTGGGGAATACTCCTACTCCGTGTTCAGCTTTTTGGAGATTTCCTGTGGACGCACTCAAGATGCAGGAAGGAACATTTATTAACTGCTAGTTTCTGGCTGACGAACAGAGACTATTCCAGCGGATTCTGCAGATTGACTGAGGAGTAGATGAGTATTTGAGGAGATGAACAGAGCTTCTGCACAGCTGTGGATTAATTTCAGCATGGAGTTGCTTGTGACTGCAACAGCAGAACTGTCTGTCTGACCAGTATACCAGAGCATCTGACAAGGACAGTGGCCggcttttctttctcattctctttcctCCTAATCTCATCTTTTATACTTTCTGCACTTGTGTGggtatctctgtctgtctgtctctgtgtgtgtgtctctctctctctctttctctctctctgggaggAACACCACCGATGCTACCTGCTCTTAGATGTCACGTCCTTTCCTGAAAGGTGTGGAGTAACTGAACCGATAGGAGTGTGATGTACCTCCATGGCTCCCTCAGTAGGTGATCAACTTCATCATTGTGTGCCTAAGCGGAGCGCGAGCTACTGGAACTCTGGAACTATGACAGACAATACCTGTACAGACTGTTAAAACCCTTACTGCATACatggctaacacacacacacaaacacacagtgaggTCTGCTACGTACACATGCAAGCATGGTCATCATCCAGTATCAAACACAAACTTCACTTCCTTCAGCTGCTGTCTCAATTAAACCGTATTCAAACACAGACTTCATACCCATGGCTACTGGCTGCCGTGTAAACTGTATATGCGATTACTGCTTTTCtctgttgtgtgtgattttttttttttttttttccctcctctctcttgTTCCCTTTAGGACATGCCTTAACTGTACAGACAAGCCTgtactttggggaaaaaaatgcttagTGTGTTTAGTTAACCTGATTTTACTCCCTTGTTTATTCCTGAACTAAATGAGTTAAGTAGCTTGATCAGAGCTTTGGTTGAGGATTAAGTGTGATGTCTCTGTGATCAAATATGTGACAAATCCCATCGGCCctaaatttaacaaataaaaagacattgtGTCAGTTTAAATAGAATCTGGCTAATTCTAAGTGAATAGTTTGAGGCTTATTTGTGTTACAGAAAATGCAGCATGGTGAAAATGAGGCATTGTGTTAAAAAGCTGTAGTTTGGACTGATTATGTAGTGGAATGACCTGAAATTACTGTAACTTGGGTGGcccattttggtcatttttgagAGAGTTTGAGCCACATGCAGTTTtaacagtgtcagtgctgttaAACAGACATGATTTATCTGACAGAATGGTTCTGCTTTGAAATGGCTATGGAAAAAAATGGTTGGAGTTCTTAAGTGCATGATGCCCTTTTGTTATGAGTGGTGattaattaaactaaataattaatttagtttaacGAGAATGATGGGAGTGATTGGAATGAATGGCCCTGTTCATTAAAGATCACATTATCTTCAAGGACAAAAGTTGCAGGTACATGTACCCATGCCAGCTTTGGGCTTGATCATAATCtgaccccccaaaaaaaaaagaaaacaaccaaCCTTATCCTCTAAACCAAACACTTGAGTAAtggctgcaggaacatctggaaTTTCTTAGATATTTCTCAACTCCCATCGTCTTAGTACGAAGGGAGAAGATCAGTATTGAGTTGGAATCTTCTTGTCTTCACATCATTTGCATGTAATTTGTAGTGGAGGTGACGCATTTGCCTATTCCCATTCTACTTAAGTTTGTCCTGTAGCTAAActtttaaaatcagatttaacGGTGAAATCTTActgataataaaatgataacataCAGATTAATAAGAGTGTAAATAGTTTGGgtttttgtttgaaaatatGAGTACTTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74949 lncRNA upstream 412478 12357832 ~ 12358248 (+) True G63242
TU74948 lncRNA upstream 413045 12355550 ~ 12357681 (+) True G63241
TU74788 lncRNA upstream 475603 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU74814 lncRNA upstream 520938 12248663 ~ 12249788 (+) True G63137
TU74720 lncRNA upstream 766503 12003990 ~ 12004223 (+) True G63061
TU75285 lncRNA downstream 29091 12801894 ~ 12834330 (+) True G63547
XR_004577946.1 lncRNA downstream 150067 12922870 ~ 12926987 (+) True LOC117596991
TU75450 lncRNA downstream 346665 13119468 ~ 13119677 (+) True G63685
TU75461 lncRNA downstream 362856 13135659 ~ 13135860 (+) True G63696
TU75429 lncRNA downstream 426204 13199007 ~ 13199862 (+) True G63666
XM_026937160.2 mRNA upstream 2822 12742257 ~ 12767904 (+) True gigyf1a
XM_026936008.2 mRNA upstream 37248 12718253 ~ 12733478 (+) False epoa
XM_026937280.2 mRNA downstream 4374 12777177 ~ 12788225 (+) True wrap53
XM_026936981.2 mRNA downstream 23138 12795941 ~ 12861217 (+) True efnb3b
XM_026935904.2 mRNA downstream 178266 12951069 ~ 12976437 (+) True serpinh2
XM_026936299.2 mRNA downstream 208046 12980849 ~ 13115167 (+) True dnah2
XM_034303612.1 mRNA downstream 343413 13116216 ~ 13198549 (+) True kdm6ba
TU74787 other upstream 475603 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1073431 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 2107319 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 2205002 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 2239198 10531456 ~ 10531528 (+) True trnak-cuu_20
TU75687 other downstream 645574 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 697966 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 785820 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 932773 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 1482941 14255744 ~ 14269340 (+) False brms1

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU200017 False 3117 lncRNA 0.40 2 NC_035912.1 39891919 ~ 39896070 (+)