RNA id: XR_003404040.2


Basic Information

Item Value
RNA id XR_003404040.2
length 4134
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id LOC113540557
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12768585 ~ 12772822 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttttttttttttttttttgcattgcttaCCAAGAtgtataaaatgacaaaagaggccattttgtgatttttcaaGCAAATTAGAATTTTGTACTttgtgagtgaaagtgtgtgagagaatgtatgtttgtgtatgttgtaTATTTGCAGCATCTTTGTGTATTTGACTGAGGGGGACAGAGGGCAATGGCACAacccatccttttttttttttttttggtcatttccTCATCCCCAGACGGATATGAAAGCTGTAGATGCAACcagaaaaaaagctttagcTTCTTTTATAATTAGCAGTACTCTGCATGCAAGTGTTCCCCCCCACCCCCTTCTGTCCACCACCCGTATCAGTGCCTCTAGTAGGTTCATGGGCCAAGTCCTGAGGTTATTTGTATATGCGtgcatttgagtgtgtgtgtctgtgtgtttgcgaGAGAGTGCGTTTCTGTCCACACATGTGCCTAAGAACTTAAACGGGCGAGTGGTTGGTGTTCATTGCTGCCATTGAGACATTATTTTTTGGGAGTGTGTCTCAGAAAAGACCCCACTCCCATGCTTATAAACCAAGAGCTTTGTGCGTTGTGCACACCATTCTCTGTAGTTCTTCTAGTGTAGCCTGGGGATAGTCCATTGACAGGATTGTCCACTTTTTTGGGGATGTGGCTCACATTGCCTTGTTGTCCACTCTCTTACTCCTGAGCAAGTGACTGACTGGCTTAAATAGATCCCATCAAACTGTGCAAGTGCACaaaaatgtgcacaaaatgtTCATCTAATGTTACTTGTTTGTTGTTGACTCTTTGTTATGGCATATATGTATCtctatacacatatatacacacaagtaTTTGGACTACAAACGAGCACTTGGGGCTgctactttttttattatttttgaaatgaTTTTCCTGTAGTTTTTAGTTTCATTGCCACCATGTGAAGTGTGTTGTgtctttttacaaaaaaatattgaatgtattccaaaaaaggtgaaaaaaaaaaacaacaaaaaacaatgaagccggattttttttttattcagctcAAACGTGGAAGCGTAGTCGGATATTGGAATGGAGCGAATGGCGTCTTTGTCAAAAGCCTGTTCAGCAAGCAGCTGGAGAATCAAGACGACTACCGCCAGAAGACACTGCCTCTACAATCCTGTTCATATAGACATTATGACTATGATGATGAGAGCGAAAAAATCTATTCCATACTGGAGTTTTGGTTGTTTACAGAAAAACACTTGGACTTTTGTGGGTGCGTGTTTCCCTTTTTTGGAGGGTGGATTAAGAAACATTTGGGGAGGAGGTGCTGTAGTAATCACATGACATGACCTTGTTGTGAAATGGGTGTGGCATACAGAAAGTCTCCATTCTTGTGACTTTGGGGATTGGGTGCTGAGATAAGCAGTTATTACAAAGCTGACCATATTTTGTTTACTGAGTTTgttgaatttgtttttgtttactttttgcctattttttttcttcacagtggatttaaatactttttcatccagagaaaaaaagtttgtgttcctggaaaaaaaaaaatcaaaaatagcACAGACCATTACTTTTCGGTACCTTGAAATGCACGAATGCGATTGTTGATGCTTTAAAAGTTTTCTTCCCCGGAGTATCTAGAACTGGCCTCTAGATTTTGATTTAGAAAAgtttaatgaaaatacaaagaTGGACATGTCTGTGATGTGTTGGAAAGTACAGAAGAACATGAGGGACATTTATGACCTCAGCTCTGTCCTCATAGCCTGGGGACTGTAATTAGCCTTTCTGTTTCTATGTGGGCGAAGGGAGTATCGCAGCAGTTGACGTTTTTCTTCTGAAGATAATGAGTGAACGATCACTGCCTCGATGCTCTCACTATGCACTTTTCACACACTCAAAACTGTGAGGAACCTGTGGGGACATGTCGAGGTAGACAGAGGGCGCTATTGAAGCATTGCTGGCCGGACACTTCAAATCCAGCTAAAGCCCCTCCAGTGAGAACCTAAACAGGCATGTTGTTCCCTCTTTTTGAACTTGTACATAAGTgatgctggttttttttttttttttggagggggtttgtttttgtttgttggttttttttgtcctcttaACTCACCAGTTCTTAGGACTGAACATAATATTGATCACACCAATGAAGTAGGCTAATAAGACATCAGACATTTTGAATGTTGGGGAATACTCCTACTCCGTGTTCAGCTTTTTGGAGATTTCCTGTGGACGCACTCAAGATGCAGGAAGGAACATTTATTAACTGCTAGTTTCTGGCTGACGAACAGAGACTATTCCAGCGGATTCTGCAGATTGACTGAGGAGTAGATGAGTATTTGAGGAGATGAACAGAGCTTCTGCACAGCTGTGGATTAATTTCAGCATGGAGTTGCTTGTGACTGCAACAGCAGAACTGTCTGTCTGACCAGTATACCAGAGCATCTGACAAGGACAGTGGCCggcttttctttctcattctctttcctCCTAATCTCATCTTTTATACTTTCTGCACTTGTGTGggtatctctgtctgtctgtctctgtgtgtgtgtctctctctctctctttctctctctctgggaggAACACCACCGATGCTACCTGCTCTTAGATGTCACGTCCTTTCCTGAAAGGTGTGGAGTAACTGAACCGATAGGAGTGTGATGTACCTCCATGGCTCCCTCAGTAGGTGATCAACTTCATCATTGTGTGCCTAAGCGGAGCGCGAGCTACTGGAACTCTGGAACTATGACAGACAATACCTGTACAGACTGTTAAAACCCTTACTGCATACatggctaacacacacacacaaacacacagtgaggTCTGCTACGTACACATGCAAGCATGGTCATCATCCAGTATCAAACACAAACTTCACTTCCTTCAGCTGCTGTCTCAATTAAACCGTATTCAAACACAGACTTCATACCCATGGCTACTGGCTGCCGTGTAAACTGTATATGCGATTACTGCTTTTCtctgttgtgtgtgattttttttttttttttttccctcctctctcttgTTCCCTTTAGGACATGCCTTAACTGTACAGACAAGCCTgtactttggggaaaaaaatgcttagTGTGTTTAGTTAACCTGATTTTACTCCCTTGTTTATTCCTGAACTAAATGAGTTAAGTAGCTTGATCAGAGCTTTGGTTGAGGATTAAGTGTGATGTCTCTGTGATCAAATATGTGACAAATCCCATCGGCCctaaatttaacaaataaaaagacattgtGTCAGTTTAAATAGAATCTGGCTAATTCTAAGTGAATAGTTTGAGGCTTATTTGTGTTACAGAAAATGCAGCATGGTGAAAATGAGGCATTGTGTTAAAAAGCTGTAGTTTGGACTGATTATGTAGTGGAATGACCTGAAATTACTGTAACTTGGGTGGcccattttggtcatttttgagAGAGTTTGAGCCACATGCAGTTTtaacagtgtcagtgctgttaAACAGACATGATTTATCTGACAGAATGGTTCTGCTTTGAAATGGCTATGGAAAAAAATGGTTGGAGTTCTTAAGTGCATGATGCCCTTTTGTTATGAGTGGTGattaattaaactaaataattaatttagtttaacGAGAATGATGGGAGTGATTGGAATGAATGGCCCTGTTCATTAAAGATCACATTATCTTCAAGGACAAAAGTTGCAGGTACATGTACCCATGCCAGCTTTGGGCTTGATCATAATCtgaccccccaaaaaaaaaagaaaacaaccaaCCTTATCCTCTAAACCAAACACTTGAGTAAtggctgcaggaacatctggaaTTTCTTAGATATTTCTCAACTCCCATCGTCTTAGTACGAAGGGAGAAGATCAGTATTGAGTTGGAATCTTCTTGTCTTCACATCATTTGCATGTAATTTGTAGTGGAGGTGACGCATTTGCCTATTCCCATTCTACTTAAGTTTGTCCTGTAGCTAAActtttaaaatcagatttaacGGTGAAATCTTActgataataaaatgataacataCAGATTAATAAGAGTGTAAATAGTTTGGgtttttgtttgaaaatatGAGTACTTAATAAATGATTATCATTAAAGATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74949 lncRNA upstream 410337 12357832 ~ 12358248 (+) True G63242
TU74948 lncRNA upstream 410904 12355550 ~ 12357681 (+) True G63241
TU74788 lncRNA upstream 473462 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU74814 lncRNA upstream 518797 12248663 ~ 12249788 (+) True G63137
TU74720 lncRNA upstream 764362 12003990 ~ 12004223 (+) True G63061
TU75285 lncRNA downstream 29072 12801894 ~ 12834330 (+) True G63547
XR_004577946.1 lncRNA downstream 150048 12922870 ~ 12926987 (+) True LOC117596991
TU75450 lncRNA downstream 346646 13119468 ~ 13119677 (+) True G63685
TU75461 lncRNA downstream 362837 13135659 ~ 13135860 (+) True G63696
TU75429 lncRNA downstream 426185 13199007 ~ 13199862 (+) True G63666
XM_026937160.2 mRNA upstream 681 12742257 ~ 12767904 (+) True gigyf1a
XM_026936008.2 mRNA upstream 35107 12718253 ~ 12733478 (+) False epoa
XM_026936009.2 mRNA upstream 35107 12718253 ~ 12733478 (+) False epoa
XM_026936011.2 mRNA upstream 35107 12726741 ~ 12733478 (+) True epoa
XM_026936010.2 mRNA upstream 35107 12727284 ~ 12733478 (+) False epoa
XM_026937280.2 mRNA downstream 4355 12777177 ~ 12788225 (+) True wrap53
XM_026936981.2 mRNA downstream 23119 12795941 ~ 12861217 (+) True efnb3b
XM_026935904.2 mRNA downstream 178247 12951069 ~ 12976437 (+) True serpinh2
XM_026936299.2 mRNA downstream 208027 12980849 ~ 13115167 (+) True dnah2
XM_034303612.1 mRNA downstream 343394 13116216 ~ 13198549 (+) True kdm6ba
TU74787 other upstream 473462 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1071290 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 2105178 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 2202861 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 2237057 10531456 ~ 10531528 (+) True trnak-cuu_20
TU75687 other downstream 645555 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 697947 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 785801 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 932754 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 1482922 14255744 ~ 14269340 (+) False brms1

Expression Profile