RNA id: TU75285


Basic Information

Item Value
RNA id TU75285
length 429
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G63547
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12801894 ~ 12834330 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtgtgtgtattcactaACAAGCTAATAGCCTGCTCTCAAACTTGAAGTGTCTGAAACAGGCAGAGGTGCGATAAGGAATACATTTACAGGaaactacattttcaaaccAGACCTCACACTCCACCTGAGTTGCTGGTGCACTGGTGGTGGAGATTGTGCCAGTAGTTTTGAGATAGCAGGTGTAGTTCTGCAAGTTTGGGTATTtgacagaaggagagagtgagagagagaaccaaAAATAATCCCTGGCCCCAATATCCTGTTAAAACATTTGCATGTTCTGCCTGCCTATCGTGCACACTTTACCTGTGTAAGCTAGTTTAGCACATGGTTTAGATATATCGACCCTGATCTCATGAAAAATGAATCCACATTTAATTAGATAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404040.2 lncRNA upstream 29072 12768585 ~ 12772822 (+) True LOC113540557
TU75255 lncRNA upstream 29091 12770726 ~ 12772803 (+) False LOC113540557
TU74949 lncRNA upstream 443646 12357832 ~ 12358248 (+) True G63242
TU74948 lncRNA upstream 444213 12355550 ~ 12357681 (+) True G63241
TU74788 lncRNA upstream 506771 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_004577946.1 lncRNA downstream 88540 12922870 ~ 12926987 (+) True LOC117596991
TU75450 lncRNA downstream 285138 13119468 ~ 13119677 (+) True G63685
TU75461 lncRNA downstream 301329 13135659 ~ 13135860 (+) True G63696
TU75429 lncRNA downstream 364677 13199007 ~ 13199862 (+) True G63666
TU75479 lncRNA downstream 379647 13213977 ~ 13219859 (+) False tmem88b
XM_026937280.2 mRNA upstream 13669 12777177 ~ 12788225 (+) True wrap53
XM_026937160.2 mRNA upstream 33990 12742257 ~ 12767904 (+) True gigyf1a
XM_026936008.2 mRNA upstream 68416 12718253 ~ 12733478 (+) False epoa
XM_026935904.2 mRNA downstream 116739 12951069 ~ 12976437 (+) True serpinh2
XM_026936299.2 mRNA downstream 146519 12980849 ~ 13115167 (+) True dnah2
XM_034303612.1 mRNA downstream 281886 13116216 ~ 13198549 (+) True kdm6ba
XM_034303611.1 mRNA downstream 281886 13116216 ~ 13198549 (+) False kdm6ba
XM_034303610.1 mRNA downstream 323118 13157448 ~ 13198549 (+) False kdm6ba
TU74787 other upstream 506771 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1104599 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 2138487 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 2236170 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 2270366 10531456 ~ 10531528 (+) True trnak-cuu_20
TU75687 other downstream 584047 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 636439 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 724293 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 871246 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 1421414 14255744 ~ 14269340 (+) False brms1

Expression Profile