RNA id: TU75429


Basic Information

Item Value
RNA id TU75429
length 856
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G63666
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13199007 ~ 13199862 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taaaatacattttatttaacttctTTCTTCTATTTATTGACTATGTTATGTTCTCCTTGAGATGTCTGTTGTCCATTATTTTAGTAAGTTTTGGAAGGAGAGTTTCAGGGGTGCTTAGTTAATAAAAGGAGTTATGTTTTCTGGCCTTTAAAGTGTCCTCATGGCCTGATGATGCGTAACCCCATGAGGAGAGTTTGAGTGACTCCTCTCTCCTGTAGAGTGTAGAAGGCAGAGCAGTTGTAGTTTGTCTAACTAAAAGCAGTCTTTTGTATGGGAAgcaaaaggctttttttttttttttaaccaacattAGCAGCAAAATTGGacataaatgcaaataaattcagAGCCGTTTCTAATTATCTACATATTTCGTGGTGCTTGagtttgtttgaaatgttttatatgaGAGAACAGTCACTATGCCAACCATAAGGCAGAATCTCTGGTTATACTTAATCTGACTGCAGTTGGTTATTATAAACCAAATATTGAGGGtttaagtgtttttgtttgaaaaataacatgaaactGTAAATACTGTGGCATTTTACTGGAATGAGGTTAAGTGTGAATCGAATTATTCATTCGACTGAAactgtaatttctttttaattctgtCTTAAGCTTGAATCAATTATTTCACGTATAATGAAACTGTTGGTTACGATTATGATACAGAAGGTGCTGTTCCCTTTGAACTACTCTGtctttcagttttgtttctaaagaaaaaatctatttttcctGTTGCAATATATCTTCTGTTTgtggtcatttatttaaaattctgcACTGTTTTAGAGAGTTCACACAGAAAGCAAACTGAGCCAGACACGTCTTAAACACTTCATGA

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75461 lncRNA upstream 63147 13135659 ~ 13135860 (+) True G63696
TU75450 lncRNA upstream 79330 13119468 ~ 13119677 (+) True G63685
XR_004577946.1 lncRNA upstream 272020 12922870 ~ 12926987 (+) True LOC117596991
TU75285 lncRNA upstream 364677 12801894 ~ 12834330 (+) True G63547
XR_003404040.2 lncRNA upstream 426185 12768585 ~ 12772822 (+) True LOC113540557
TU75479 lncRNA downstream 14115 13213977 ~ 13219859 (+) False tmem88b
TU75440 lncRNA downstream 59012 13258874 ~ 13266479 (+) True LOC117597082
XR_004578006.1 lncRNA downstream 59529 13259391 ~ 13267034 (+) False LOC117597082
TU75438 lncRNA downstream 76959 13276821 ~ 13277704 (+) False slc16a13
TU75437 lncRNA downstream 84679 13284541 ~ 13285834 (+) False slc16a13
XM_034303612.1 mRNA upstream 458 13116216 ~ 13198549 (+) True kdm6ba
XM_034303611.1 mRNA upstream 458 13116216 ~ 13198549 (+) False kdm6ba
XM_034303610.1 mRNA upstream 458 13157448 ~ 13198549 (+) False kdm6ba
XM_026936937.2 mRNA upstream 458 13157448 ~ 13198549 (+) False kdm6ba
XM_026936936.2 mRNA upstream 458 13175795 ~ 13198549 (+) False kdm6ba
XM_026936249.2 mRNA downstream 6795 13206657 ~ 13214043 (+) True tmem88b
XM_026936242.2 mRNA downstream 32772 13232634 ~ 13242400 (+) True trip6
XM_026936240.2 mRNA downstream 32772 13232634 ~ 13242400 (+) False trip6
XM_026936241.2 mRNA downstream 32772 13232634 ~ 13242400 (+) False trip6
XM_026936243.2 mRNA downstream 33024 13232886 ~ 13242400 (+) False trip6
TU74787 other upstream 903884 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1501712 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 2535600 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 2633283 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 2667479 10531456 ~ 10531528 (+) True trnak-cuu_20
TU75687 other downstream 218515 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 270907 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 358761 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 505714 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 1055882 14255744 ~ 14269340 (+) False brms1

Expression Profile