RNA id: XM_026935973.2


Basic Information

Item Value
RNA id XM_026935973.2
length 4753
RNA type mRNA
GC content 0.42
exon number 6
gene id slc16a13
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13275462 ~ 13285834 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttaaacaataataacagctGTATAAAGAGTGACTGCAATGTCGTCGGCTATGTGCCCTTATCATAAGATATCTTAAGCTTAATCGGCTGGGTGGTCGAGGCAGTGCGTCTATTCGGTTTTAATAGGAAAGATTtgatcagtctgaggttacagACTGTCATAATACAGGTACGGGAAGTGCTGTTTGGGATAGTTTATTGGGATAGTGTTTAGTACCTGCACGCTAGCCTTACTCCAAATTTAGCTTCCCGGTAACTGCTCAGTGAAAGctttccttttgttttcttttgacTAGAATGCGACAGCATGACGGAAACCAGGACAACAGTCTCTCCCAGCAGTAATAAAGTGACACCTAATACAGTACCACAGTTTAGAAAAGTCTAAATCCCGGCGCTGTTTATTGACACACCGGCTGAACAGCCTACACATTCTCGGTGTCAAAATAAGAGTATCCGTGTTGTAGAGAAGGTCGTCTGTGCGCTTTTTTAGCTGACAAATGTAGAAGTAGCCATGAACAAGACCTGCATTCTTCTGCTGACTTTTAATGGTAAATTTCCACAGTCTTTACTAGccttgaaaattgctgttgcGGTTCAATAATAACAACTTTTCAGTGCTACGTTCAGTGCGTACGGAGAGCAAGCATCACGTCTGTCATTTTCCCTACCGGTACCTGTATTTTGCTTAAACTACCGGTCAGTGCCTGTCTGAATAAGGACTAAATAAAACAAGCCGTGAAAGCGCTTGTCCTGTTCGGTTTTCAGTCGTAAATACGGAGCACAAGCGCACAGAGACAAGATGTGACCGTGCTGAAGTCTGACTCTAGCTTGTCTTACAGCGATCTCACTGACATCTACAGAGCAGCGAGTGATGGCTATGCAGCAGAAGAAAAAACACCAGCCAGTTGGGCATGTGGAAGCTCCAGATGGAGGTTGGGGCTGGGTGGTTGTGGTTGCACTCTTCATGGCTTCAGCCCTGGTTTTTGGGCTCATCCGCAGTCTGGGGGTTTTCTTCGTGGAGTTTGTGCAGTACTTTGGGGAGAGTGCTCAGGCTGTTTCCTGGATAACCTCTATAGGAGTGGCCATGCAGCAGTTACTTAgtcCTGTAGGCACGGCTGCATGTAATGCATATGGAGCTCGTCCTGTTGTTATGATGGGAGGCTTTCTTTCTGGACTGGGGCTCATTCTGGCTTCTCAGGCtacaacactcacacacctctACCTGACCATGGGACTCATTTCAGGGTCAGGCTGGGCTCTAGTCTTCACCCCTACAGTGGCCTCTGTGATGCAGTATTTCAGCACACGGCGTTCTCTAGCCATGGGCCTTGGCTTCACGGGTGTGGGTTTATCCTCCTTCGCTTTCTCTCCACTTTTCCAGTACCTGGTACAGTTGTATGGGTGGCGTGGGGCGCTTCTGATTCTCGGAGGTCTCAGCCTCAACATTGTGGCCAGCGGTGCTCTTATTCGACCACTCAGACACACTAAAGTTGTGGAAAGGAGTAAAAGCAACAGTGTGTCAGACAGCTGTATGTCTTTCTTTTCCCGCTCCTGTGAGTATTTTGAGCTGTCACTGCTCTTGCACCGAGGCTTCCTCACCTACAGCTTGGCCGTCACGTGCTTCAATGCTGGGTACTTTATCCCATATGTCCACCTTGTGGCCCACAGCCGCCTTGTGGGCTTCAGCGAATTCCAGGCTGCATTTGTCGTTTCCAGCACGGGTGTGACAGACATTGTGGGTCGTGTGATGTCCGGCTGGGCCTCGGATTTGCGGCGCATGCGCTCACTCCACTTACTGACCATATGGACAGCTTTAGTGGGTCTGTTCCTCCTGCTGCTGCCCCTCTGCTCACTGCAAGGGAACTATGGGGGTCTGCTGGCAGTCAGCCTGGCATATGGCTTCTGTGCCGGTGCTATGACCCCACTGGTGTTTTCTGTGGTGCCAGAGATTGTGGGCATGGAACGCATGGTCGGTGCACTCGGACTCCTGCAGCTTATTGAGAGCGTCGGAGGCCTACTTGGAGCTCCACTGTCAGGCTGGTTGAGGGACCTCACAGGTTCTTACATATGTTCCTTTGTGGTAGCTGGTGGATTTCTCATCTTGGGTACCATAATAACAACGACTCTTCCCTATTTCTGTTCTTGTACCGAACCCCCACCCCTGTCCccaaaaaagaccaaaaatgaGTTCACTGAAGATGAGCCACTTAAACAGGTGTTATCCTTGGACTTCACAGAGAATATACAAAACACAGACAGGATTCCAGAATCACTTCCTTCTCAAAACCATATAACAGAACCAAGTCTGGAAGTGGAAGGCACACCTCTCAGTGCAAACCAGACAGAAGACGAGGCTACTTGCTGATTGGCTGGAGGAGCAGTTTGGGCTTGCCACAGGAATCATATTAAATAAGGTTGCTGATTTTATGCTGCTTATTCTTTTTACTGTGAAAGAACTCATTGTGGTACAGcgtttacagagaaactgtcagTAGCAGGTAAATGTAAACCTGACAAAAACTACCATTATCAAAAATTTTATACCACTTCCGTTCCCTTTAGGAATAAAGATCAAGCCAGAAAACTCAGCCAGTTTTTAGGGTCAGACACCAAATTCATCTTTGTTACAATCTTTATATGTTAATTGTTATTGTTTGCATCTAAACCAACCCTGTAGACTCATGTGCAGCAGTGCTATAGGCTTTCATACCAATCAAATATAGGAAATTGCTAGAACATATAGGAATCGACAGTGATCATAGAAACCACATTAAAAATGGAACATATCACATTTTGGTGACAGTTTATTGCTTTGCTGGCAGATTATTGGACCTATTGCTGAACAGCTCTCACTAAACTGATTAGCCCAGCAATAGTGTCAGTCTGTAATACACACAGCATTGTTCTGTATCTTCAAAGGGTATCTCATGTTGTGTCAACATTAGGAACAGTTCCGCTTTTAATGCACAGTATACTCTTTGTTACACATAGGGAAAGACCAGTGTTTCCCCTAAGCAGTCCAGAGATCAGCTGAGCTGTAGCAGCTGCATGGGGTCCTATGACTGTGTAGTAATTGTGGTCACTGAACTACGTGATGCACTTCATCCACTGAAGTGTTCTAGACTTGAACTCACcaagaaggattttttttttaattaaaaatgtcgGTATGTATTTGAAGAAGAACTTGAAGCATTGTAGGTTTCAGTAGTTTGCTACCAGAGTATACTAAACCAGCATCAATaagacaaatattttttaaaagaagacaaatatttttacacaatgTACTCACATGAATTCTAGCTGAATGGCACTACCTGAATGTCACAGCAtacatttgcactatttttcACACTGAAACCTTTTCCCATATGGGTTTTATTCACTGTCtacttgaaaataaaaaaaatgctgcatttttAGTCAGAATTGTAGGTGCGTAGACATGCTATGAAGATGACCTTTATCCTGGCATCAGCAGAGGCACATTCAGGGAACACGAGTTTAGTGCTGTGTAACGAGTAACTTACTTTTTAGAggccatattatatataatgcatattattaatgataattttttttaggttttgtgtgtttttagttaTTATATCAGTCCTTTGGACAGACGGTGGCCTAAATTTGTTTGCCTAAGATgtatgtgttacagtgtgttggATTATGGTTGAAGCTTTTTGACATCTTTCAGTTGGCTTGGTTAGAAAGCACAATTAACAGAAGTTTCATGGCGTGATGGtcttttaatgacatttaaattGCGGCATTGTAAAAATATTCAAACCTTATTCAACTAGGAGTATTCTACAAAAACATGACAAGACACAAAATAAATGGTTGaggtttaaatgtaaattaggtTTAACATTAGcaatttcttttaattatgtGCTAAATTTTTGACCATGTAAAGCAAAGCTGAGACTCAACATTCATTCTTACCAGTGAGACATTCCTGTGGACCACTGATATTGCTTACAGAGGATCAGCTCTTGCTAGTTGGGTATCTTATTCAAAGGTCCACAGGTGGATTGGTGAGCGATTTGGTTAGATAGTTGAGGCAAACTTGTACATATTTAGCCAGGCATGCTTGTTACTGGTGTTTTACGTTATTGCATGAAAGGCAGTTACTCATTGAACATTATTTGAGCTTCGCTGAGGTCACTGTGACCCATCTGTTGAAATCATCAAATTAAACATTATGTGTGCTCAATGACTCAGctaagctgattatttttcagcaGTTAGTCTCGGAGGCCCAGTACCTTATATTTTGCTATCCTATCTGTCTTACTATTCATTGTGGTCCATGTAATGCccatgattaaaaacaaacataggATTACTATATGGTGTATATGGATTATTTAGTAGCCACTGAAATCTTCTAAAAGACATGTCAGTGTCTGAGTGCTTTTAAATATGAGACTCTGATTTGCTTTGAGCTCTTAAAGATAAACGTATGATCCTTAATCGACTGCGTCTATTAGCTCCTCTACTGAAAAACACTACACATACAAGATCAGTAAACATGGCTGAATCTGGCACACATAATGGAAACCTCtgactttaaaaaatgaaactaggGATTTGTTTCATAAGCATACTCATTGATTGCAACGTGCATACTTGGTGCTGTTGTCAAAAAAGGAGCATTTTAAATTAGCTGTAAATCCTTATTTGATAAATTATTCAGTACATTAtcatttgaagtgttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578006.1 lncRNA upstream 9078 13259391 ~ 13267034 (+) False LOC117597082
TU75440 lncRNA upstream 9633 13258874 ~ 13266479 (+) True LOC117597082
TU75479 lncRNA upstream 56253 13213977 ~ 13219859 (+) False tmem88b
TU75429 lncRNA upstream 76250 13199007 ~ 13199862 (+) True G63666
TU75461 lncRNA upstream 140252 13135659 ~ 13135860 (+) True G63696
TU75666 lncRNA downstream 101932 13387598 ~ 13387954 (+) True G63889
TU75685 lncRNA downstream 131555 13417221 ~ 13417441 (+) True G63901
TU75682 lncRNA downstream 173696 13459362 ~ 13467726 (+) True G63898
TU75739 lncRNA downstream 218794 13504460 ~ 13504719 (+) True G63936
TU75791 lncRNA downstream 284336 13570002 ~ 13572833 (+) True G63976
XM_034303705.1 mRNA upstream 24298 13245985 ~ 13251814 (+) False mettl3
XM_026935834.2 mRNA upstream 24298 13245986 ~ 13251814 (+) True mettl3
XM_026936241.2 mRNA upstream 33712 13232634 ~ 13242400 (+) False trip6
XM_026935975.2 mRNA downstream 26214 13311880 ~ 13327219 (+) True agfg2
XM_026935976.2 mRNA downstream 26215 13311881 ~ 13327219 (+) False agfg2
XM_026935960.2 mRNA downstream 42367 13328033 ~ 13375050 (+) True si:ch73-335l21.1
XM_026935961.2 mRNA downstream 42367 13328033 ~ 13375050 (+) False si:ch73-335l21.1
XM_026935962.2 mRNA downstream 42367 13328033 ~ 13349543 (+) False si:ch73-335l21.1
TU74787 other upstream 980989 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1578817 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 2612705 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 2710388 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 2744584 10531456 ~ 10531528 (+) True trnak-cuu_20
TU75687 other downstream 132711 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 185103 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 272957 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 419910 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 970078 14255744 ~ 14269340 (+) False brms1

Expression Profile