Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578006.1 |
| length | 506 |
| lncRNA type | inter_gene |
| GC content | 0.47 |
| exon number | 3 |
| gene id | LOC117597082 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 13258874 ~ 13267034 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0016021 | integral component of membrane | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU75479 | lncRNA | upstream | 39532 | 13213977 ~ 13219859 (+) | False | tmem88b |
| TU75429 | lncRNA | upstream | 59529 | 13199007 ~ 13199862 (+) | True | G63666 |
| TU75461 | lncRNA | upstream | 123531 | 13135659 ~ 13135860 (+) | True | G63696 |
| TU75450 | lncRNA | upstream | 139714 | 13119468 ~ 13119677 (+) | True | G63685 |
| XR_004577946.1 | lncRNA | upstream | 332404 | 12922870 ~ 12926987 (+) | True | LOC117596991 |
| TU75438 | lncRNA | downstream | 9787 | 13276821 ~ 13277704 (+) | False | slc16a13 |
| TU75437 | lncRNA | downstream | 17507 | 13284541 ~ 13285834 (+) | False | slc16a13 |
| TU75666 | lncRNA | downstream | 120564 | 13387598 ~ 13387954 (+) | True | G63889 |
| TU75685 | lncRNA | downstream | 150187 | 13417221 ~ 13417441 (+) | True | G63901 |
| TU75682 | lncRNA | downstream | 192328 | 13459362 ~ 13467726 (+) | True | G63898 |
| XM_034303705.1 | mRNA | upstream | 7577 | 13245985 ~ 13251814 (+) | False | mettl3 |
| XM_026935834.2 | mRNA | upstream | 7577 | 13245986 ~ 13251814 (+) | True | mettl3 |
| XM_026936241.2 | mRNA | upstream | 16991 | 13232634 ~ 13242400 (+) | False | trip6 |
| XM_034303431.1 | mRNA | downstream | 8428 | 13275462 ~ 13285666 (+) | False | slc16a13 |
| XM_026935968.2 | mRNA | downstream | 8778 | 13275812 ~ 13285666 (+) | False | slc16a13 |
| XM_026935969.2 | mRNA | downstream | 8778 | 13275812 ~ 13285666 (+) | False | slc16a13 |
| XM_026935970.2 | mRNA | downstream | 9078 | 13276112 ~ 13285666 (+) | True | slc16a13 |
| XM_026935973.2 | mRNA | downstream | 9078 | 13276112 ~ 13285666 (+) | False | slc16a13 |
| TU74787 | other | upstream | 964268 | 12292514 ~ 12295123 (+) | False | si:dkey-112a7.4 |
| XR_003403980.2 | other | upstream | 1562096 | 11644902 ~ 11697295 (+) | False | si:ch211-200p22.4 |
| TU73719 | other | upstream | 2595984 | 10657357 ~ 10663407 (+) | True | c4h4orf48 |
| trnak-cuu_21 | other | upstream | 2693667 | 10565653 ~ 10565724 (+) | True | trnak-cuu_21 |
| trnak-cuu_20 | other | upstream | 2727863 | 10531456 ~ 10531528 (+) | True | trnak-cuu_20 |
| TU75687 | other | downstream | 151343 | 13418377 ~ 13418696 (+) | True | G63903 |
| TU75730 | other | downstream | 203735 | 13470769 ~ 13475037 (+) | False | LOC113539889 |
| XR_003404009.2 | other | downstream | 291589 | 13558623 ~ 13562266 (+) | True | cited1 |
| XR_004577999.1 | other | downstream | 438542 | 13705576 ~ 13719454 (+) | False | gc2 |
| XR_004578085.1 | other | downstream | 988710 | 14255744 ~ 14269340 (+) | False | brms1 |
