RNA id: TU75479


Basic Information

Item Value
RNA id TU75479
length 1301
lncRNA type sense_over
GC content 0.42
exon number 4
gene id tmem88b
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13206657 ~ 13219859 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTTCCAGCTCATTAGCGTTATCCAGCAGCCTCGTTTAGCTGGTCGTCTGTAGGTTGGAGATTTACTTAAAAccgcttcttttttttctttttttttgcattgagcTATAAACGTTATTATAAACTTGGATTACACGCACGAACTACTAGATGTATATAATTACAGACTCGCATATTtaaaagaggtttttttttcaaaataaaaaggatGCCTCAGTGACATCACCTGCTACTCAAGTGGAATGATTGGGGGTTGTGAGGGCGGGCACAGTCTCTAAAAGGTCAAAGGTTATGTCTGAAATTTGCGTGTGgtcaaaatgattattaatCAAAGACAAGCGAAAATGCAGTATGATTCGTTATAATGGTTTTAACTAAATATTATTAGGCTATATTTTATTGAACAGAATGTTGGAGTGCATTTCACTCTATTTCTATAATCCACACAATTTCATCTCAGAAGCACATTAGGGCTGCAGCAGCAGTGGGGGAATGTAACCCTGGGGTGAGACCAGATGGGAGAGTCAGATAAACAGCTTGAAGACTCAGATATATCAATGTATAAGTCCAAATATCTGGGAGCCAAGGCAGGTGACCCTCTAGACCTTTTGTGGTGGCTCTTCAGCGTCTGCAGGTGACGGAAACGTGTTCCACAGGTGTGACATGGGTACGGCTTCTCCCCAGTGTGGATCAGAACATGGGCACGCAGACGAGTCTTGTTCATCACCTGGACAAATCGAGCACCACAGGTGTCACAgcgatacggcttctctcctgagTGAATGCGGGAGTGGGTCTTCAAATTGGCCGGACGATTAAACTGCGCCCCACACACATTACAGCGATATGGCTTTTCTCCTATAGAAACATACAGGAGAGGCAGTACAGCTTAAGTGAAATACTTGAGAGTTTATATGTGAAAATGTGACAATTATCTTCTGCAAGTTactctggataaaggcatctgctaaatgccatatatgtaaatgtacaagTAAAAGTGTCtttataatattgtattaatTGAGCTTGTCTGGGAAGTAACCACCTTACCTGAGCAGATAGGCTTTGTGCTCCCTTGATTTCCTGAATAACAAATCACTGGGGAGTGATTCTCAAGCTTGACTGGAAGCTTCCCAAAAGGATGGGCATTCTGTTTGGTGCCATCTAACACAGGGGGACATGGGCGCTGATACAGAGAGCAGAGGTCTAGGAGCAAAGATAGGTCCcagaaattgttatttttaaacatgaaccataTATAATCAATACACCCATGACAAAATCCTTTTAAGTTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75429 lncRNA upstream 14115 13199007 ~ 13199862 (+) True G63666
TU75461 lncRNA upstream 78117 13135659 ~ 13135860 (+) True G63696
TU75450 lncRNA upstream 94300 13119468 ~ 13119677 (+) True G63685
XR_004577946.1 lncRNA upstream 286990 12922870 ~ 12926987 (+) True LOC117596991
TU75285 lncRNA upstream 379647 12801894 ~ 12834330 (+) True G63547
TU75440 lncRNA downstream 39015 13258874 ~ 13266479 (+) True LOC117597082
XR_004578006.1 lncRNA downstream 39532 13259391 ~ 13267034 (+) False LOC117597082
TU75438 lncRNA downstream 56962 13276821 ~ 13277704 (+) False slc16a13
TU75437 lncRNA downstream 64682 13284541 ~ 13285834 (+) False slc16a13
TU75666 lncRNA downstream 167739 13387598 ~ 13387954 (+) True G63889
XM_034303611.1 mRNA upstream 15428 13116216 ~ 13198549 (+) False kdm6ba
XM_026936242.2 mRNA downstream 12775 13232634 ~ 13242400 (+) True trip6
XM_026936240.2 mRNA downstream 12775 13232634 ~ 13242400 (+) False trip6
XM_026936241.2 mRNA downstream 12775 13232634 ~ 13242400 (+) False trip6
XM_026936243.2 mRNA downstream 13027 13232886 ~ 13242400 (+) False trip6
XM_026936245.2 mRNA downstream 13458 13233317 ~ 13242400 (+) False trip6
TU74787 other upstream 918854 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1516682 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 2550570 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 2648253 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 2682449 10531456 ~ 10531528 (+) True trnak-cuu_20
TU75687 other downstream 198518 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 250910 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 338764 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 485717 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 1035885 14255744 ~ 14269340 (+) False brms1

Expression Profile