RNA id: XM_026936249.2


Basic Information

Item Value
RNA id XM_026936249.2
length 2843
RNA type mRNA
GC content 0.39
exon number 3
gene id tmem88b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13206657 ~ 13219859 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCAAGCTGAGGGGCAAGGAAAAGGCATCAGTATATCTCCCCAACTGACCACATACAGCTTTCAATCCACTTTGAGGTGAGGGAGAGGAGAAGCTGAgagattttaatgatttaagagACTGATGCTTTGCTACTTTATATTAGCAAAAGAACCAGGAACTGCATAACTGTATAAGGCTATATACCTGAAACTTCAGCAAGCAGAGCAaaactgaagatttttttttcccaattgcAAATTTATGAAACCACTTTGATCCAAATATTTCCAGTAAGACATTGCAGAAAGGCTTGGCAATTTTTTGGGATTATCTTTAAACACTGGACTATAAACAAGGATTTACTTAAAGAAATCTCTACTGAACAAACCAAAAGAACTAGAAGAGGACAACTACACCCCATACCACACGGTCACCATGAGTATGACTGGCACCCTAGAGGAGGGAGCTCATCACCAGGCACTTGACCTCTCTGAGGAGCTCCCActaaaccaccaccaccagcaggtTCATCTCCAGCACAGCGGCTCCACAGCCTCCATATCTCTAGCTGGGACTCCCATCAGCAGCTCCGGGGTGGTGGTGCCTCCGCCATATTCTGCACCAGTGGCTGGAGGTGGTGAGGCTCCCCTTGAGCTGAGGGGCTCTCTGGACTGTTGGGCATGTTCAGTACTTGTAACAGCCCAGAACCTGGTGATAGCTACTATTAACGTGTTCCTGGCTGCTTTGGTGTTTGGCCTGATCCTCACTCCTGTCATAGTTATGGTGGTGTTTGGATTTATGTGCCACTCCACTGTGCGTCCAAATGATACATCACCCTATTGTTCGGGCCTGCTGAGTGACGGAGGCTGTGTGGCTATGTTAATCATGGGCTTCCTGCTTGTCACTCCACTGCTTGTTCTGGCGTTGGCTGCCTATTGCAGATTGGCTCGTCTCCTGCAGCTCAGCCTCTGTTTCATCCCTTACAGTCGCGCTGTCTACAAAAACCTGCCTGCCACATACCACCACGGCCTGGGAGGAGGCTGCTGTGGACAAGATGCTGGTCAAGACAGAAAGAAGGGAAAAGTGTGGGTATGACACTGGAACTCGATAATGGGTCTCAGTGAATTTGTCATTTGcaatatgtttaattaaaaaactacAACTGTTACAAATGTACATCTCATAGCCATGTGTGGGTCCTCGAAGCgtaaaataaagcaaacatCTAACAAATTCTGTCAAAAGTGAACCAAATTCAGCAACTATTTAGGATGCATTAACTAAAGTGTATGGAAGAAAAGtgtatggaaaaggaaaaatgagGAAGGTATACAAAAAGGATCaacaagaagaaaagaggagTTGATaccttacatactgtataacaaaTAGATCACATATTTTTCTAGTTTATATTCAAATCTACTCATGTACACCAGCACTGTTATATAAACCAGGGTTGTTGCTGAGCTATCAGCAATTTACGAGTTCATACTGAAAGCCAACAAGACTTTTGTAAACTTGTACTTTTATCATGAaaacactggattttttttttctaactaaagctgGACTATTTGTCACTCCATAAATGATagccataaaataaaacattttatatgcaTATGGCCATATTACTCcttctattaaaaatattaatttctgGATAGTGAACTGTCTGATCCTTCCCCTTTGTTTGCACCTGCTATGTGTTTTTATCCTCTACATTCTGTAGCATTGTGATAGGATGTTTTTCTCCTAGACAATGTGTTTCCAGCACTGCAGAAGAATTATCAACAAAGTTTATTATAGTCAGTTCTACTCATTTAGAAAAGCCTTAACCTCAACAGCTGGCATGATATGTTCTGATGTTTGCAGTAAATTGTTTTCATATCTTGAATAGTCCAGCATTCAGATCATTCAGTGTAGTCAtgtatttctatttataaataatctttttttattattatttgtgttctgGAAATCTAATTTAGTTTTGCTATTCattcaaaacataaaaacttttTGACTTACACTCATATATACTAAATAAACCTGTGTAAGttagaaattgttttttaatgccCACATCATGTCTTGGCCCCCCACACTAGTTAACCTGTCTAACTGTGTGCTTGAATGCAGTGTATTTGCATGCCTGAGCTCAAGGTAGGACAAATGAGGGATTAGACTAATACTTGCAATGTTACGTGCTTGTCCATAATTTTAGAAAAAGAATTCTGTGAAGAAATAAAGCTTACCCATTATAAAACCATAGTAGTAGCTTATAAGTGATGGAATCAAAACTACTGTGACCTGTTTGTAAAGTGACCTAGTGGAGCCCTCTATTGTTTCACTCAAAGTACAGCAGTATATTATCATTTTCACCTGGGGGATTATCTTcccttacatacagtatgtgtatataaggaaaattattattatatatattatatatataaactttctAGGGAGCATCAGTGTTTAACCTGTACAGGGATTTGTATAAATGTGAGGGATTTTGTGCGCACGTGGTTACTGCTTGCTtacacaaccatacacacaaTTAGGAACACAACTATTCTTACTAACACGAGCTACAGACCCCCAAGCTCCTAACTTCCTAACATCCTTCAAGCAGTTATaaacaaaaacccacaaaataCTGCTATCTGCAAATTAAGAAGGGTGAAGGAGGAAAGGTTAAATATCAGCTTTGTAATTAGTCATTCAtacttcaataaataaataaataaataaataaaaacatataggCCTACTTTAGCCACACACTCTCTTCCAGCTCATTAGCGTTATCCAGCAGCCTCGTTTAGCTGGTCGTCTGTAGGTTGGAGATTTACT

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75429 lncRNA upstream 6795 13199007 ~ 13199862 (+) True G63666
TU75461 lncRNA upstream 70797 13135659 ~ 13135860 (+) True G63696
TU75450 lncRNA upstream 86980 13119468 ~ 13119677 (+) True G63685
XR_004577946.1 lncRNA upstream 279670 12922870 ~ 12926987 (+) True LOC117596991
TU75285 lncRNA upstream 372327 12801894 ~ 12834330 (+) True G63547
TU75440 lncRNA downstream 44831 13258874 ~ 13266479 (+) True LOC117597082
XR_004578006.1 lncRNA downstream 45348 13259391 ~ 13267034 (+) False LOC117597082
TU75438 lncRNA downstream 62778 13276821 ~ 13277704 (+) False slc16a13
TU75437 lncRNA downstream 70498 13284541 ~ 13285834 (+) False slc16a13
TU75666 lncRNA downstream 173555 13387598 ~ 13387954 (+) True G63889
XM_034303612.1 mRNA upstream 8108 13116216 ~ 13198549 (+) True kdm6ba
XM_034303611.1 mRNA upstream 8108 13116216 ~ 13198549 (+) False kdm6ba
XM_034303610.1 mRNA upstream 8108 13157448 ~ 13198549 (+) False kdm6ba
XM_026936937.2 mRNA upstream 8108 13157448 ~ 13198549 (+) False kdm6ba
XM_026936936.2 mRNA upstream 8108 13175795 ~ 13198549 (+) False kdm6ba
XM_026936242.2 mRNA downstream 18591 13232634 ~ 13242400 (+) True trip6
XM_026936240.2 mRNA downstream 18591 13232634 ~ 13242400 (+) False trip6
XM_026936241.2 mRNA downstream 18591 13232634 ~ 13242400 (+) False trip6
XM_026936243.2 mRNA downstream 18843 13232886 ~ 13242400 (+) False trip6
XM_026936245.2 mRNA downstream 19274 13233317 ~ 13242400 (+) False trip6
TU74787 other upstream 911534 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1509362 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 2543250 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 2640933 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 2675129 10531456 ~ 10531528 (+) True trnak-cuu_20
TU75687 other downstream 204334 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 256726 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 344580 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 491533 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 1041701 14255744 ~ 14269340 (+) False brms1

Expression Profile