RNA id: TU75682


Basic Information

Item Value
RNA id TU75682
length 1642
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G63898
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13459362 ~ 13467726 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacaaaagaaactctgagtctcatccacaACATCTTCCAAGAGTCTCATCCTATCCATCCTTGAGAGagtccaacacatctttggagtctcatccaacacacctctgcaagagtctcatccaatccatcttccaagagtctcatccactacatctctgcaagagtctccatccacatctgaaggaagtctcatcaaccaagagctttagaagttcatcacaaggagatcacgcttgctccgagactgcatccagactggttcttgcaaagcctccaactctcgccttcgcaccgctgtgaaccattcttcaaagttttgcaacccgcctatgagactccgccgggttcgcgcctcactctgtttatcttcctcattggtctttcgagacgctacataaggccaaccagaccgccgaccaatcaacatcgccggaaacgccacgagggaatccctggcaacacaaacgcaaGTGGAGAGATATGCTGATCTAAGGCAGcacggtggtgcagcaggtggtattgctgcctcacagctctttCTGTTTGGagtgtctgtgcatgttctccccagtTATGGCAGTTCAACAGCAGGTTACCACAGTGGTGTCGCACACAGGATATAGTTCTGGCACATGGACCACACGCATCTGTGACTGCTGCTCTGATATGAGCACTTggCTCATGCTGTGATGACTGCTGTACTGTGTGTTTCTGCTACACCTGTGCCTGGTGCCAAATGGCACGTGAAATTAAGATTCGTGCTCGAGCTGGCACTCGTGCCACTGTGATCACTCAGCAGGTTATAGGCTAGCTGATCCTTTGCTGCTTCAAAGTTCAAATGTTAAATCTCAGCATTTACAATTTAATCACTTCAGTGCATATTGTTCACCTTTATTTCACACTGTTCACCTTAAGTTCTGATCACACGATGACAAAagtgaatataaatatacatttctgtTATATTAACCAGTCTTAATGACTTTTGAATATTGCTTTAGCTTTGCAACAATGTTTGTTCCCCTTGCAACAATTTGATAAATAAACCATATAGCTGCTGTTAAAGCCTTTAAGCCTTGTTTTTATTGGTTTACTATCTAATTACGAACGTTGTTAATCTCAGTGATAGAAAGATTCAAACCTTCTCTCCGTAATTTTTTTCTGGGGATTCTGTGTAGCAGAAAGCAgcatgtttgttgtttttaaaggaGTGTTTTACATCACAGGACATGAAAATTGGTTGTGTTAGCAGGTGTGAAAAGTTttactgatttacattttacatttacatcgcTCAGAGGTGGGTAGAGTATCCAAAATCTGTacttaagtaaaagtacaagtacttatggaaatatttactcaagtaaaagtaacaATCTTAATAGTTACTTGAGTAAGAGTACAAAAGTATCTGATGAAAAAACTACTCAGGTAGCTAGTTACTAGTTACTTCAGATCTGATTGATATGAAGCGAAAACCCTGAATTTCAAACTACTTGGAGAGCTTTCACACACCTCTCCTTGAAAGTCTCTTTGTTCTACTTATATAAAACCTAGGTTGAAGTAAAATAGCCTATCTCAGTCCTGTGATGGGCACATTAACATCACATAACCTGTCATTTGCAATAAAATCTCAAAC

Function

GO: NA

KEGG:

id description
ko05110 Vibrio cholerae infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75685 lncRNA upstream 41921 13417221 ~ 13417441 (+) True G63901
TU75666 lncRNA upstream 71408 13387598 ~ 13387954 (+) True G63889
TU75437 lncRNA upstream 173528 13284541 ~ 13285834 (+) False slc16a13
TU75438 lncRNA upstream 181658 13276821 ~ 13277704 (+) False slc16a13
XR_004578006.1 lncRNA upstream 192328 13259391 ~ 13267034 (+) False LOC117597082
TU75739 lncRNA downstream 36734 13504460 ~ 13504719 (+) True G63936
TU75791 lncRNA downstream 102276 13570002 ~ 13572833 (+) True G63976
TU75783 lncRNA downstream 227923 13695649 ~ 13748072 (+) False G63973
TU75785 lncRNA downstream 227923 13695649 ~ 13748072 (+) True G63973
TU75843 lncRNA downstream 287818 13755544 ~ 13759751 (+) True G64025
XM_026937015.2 mRNA upstream 8539 13443794 ~ 13450823 (+) True LOC113540489
XM_034303680.1 mRNA upstream 22766 13420533 ~ 13436596 (+) True acadvl
XM_026937145.2 mRNA upstream 42501 13399435 ~ 13416861 (+) True dvl2
XM_026935898.2 mRNA upstream 65190 13391809 ~ 13394172 (+) False si:ch73-335l21.2
XM_034303510.1 mRNA upstream 65190 13391810 ~ 13394172 (+) True si:ch73-335l21.2
XM_034303789.1 mRNA downstream 826 13468552 ~ 13475037 (+) False LOC113539889
XM_026935990.2 mRNA downstream 841 13468567 ~ 13475037 (+) True LOC113539889
XM_034303788.1 mRNA downstream 2093 13469819 ~ 13475037 (+) False LOC113539889
XM_026936951.2 mRNA downstream 18810 13486536 ~ 13500833 (+) True si:dkey-33c9.6
XM_026936560.2 mRNA downstream 66091 13533817 ~ 13553948 (+) True hdac8
TU75687 other upstream 40666 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1164239 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1762067 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 2795955 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 2893638 10565653 ~ 10565724 (+) True trnak-cuu_21
TU75730 other downstream 3043 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 90897 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 237850 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 788018 14255744 ~ 14269340 (+) False brms1
XR_004578093.1 other downstream 1164304 14632030 ~ 14658936 (+) False zgc:194930

Expression Profile