RNA id: TU75785


Basic Information

Item Value
RNA id TU75785
length 1126
lncRNA type read_through
GC content 0.35
exon number 3
gene id G63973
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13695649 ~ 13748072 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaaaaaaaaaaaaaaaaaaaaagacccATCCAGGGCATACTCCTGCCTTGTACCTCATGTTTCCCAAGATTAACTGCGACTCTGACTATGATAAAGCACTTACAGAAGATGAGTGATTAACGTGATGTGTATTTCAGTGGGTGCCTGGTGTGGGGGAAGGGTGCTCCCAAAAATCAAGTCCACTCTTTGTCAGTAGTTTGTAAATGCAATGGATGATGAGGAAGTTAAATTGTATGACATAATACACAGCCAATTCAAGCTTaggtgtctatatatatatatatatattcatatttatataaaatactgtTTCATTAAAAGAATGTTTACTTTGTACAAATATTGTGTAAGTGAAAAGGTGAGATAGAATATGAAAGAGTGATTGATGGAGTGAGAGAATGAACACGTGCCAAAGAGTCgaaaaaattaattgtaaagTACCGTTTAAGGTTTTAGACTAAAAAGGCGttttacacaatatacacattttattacttacaaAATAGATAAAAGGCTTGTAGTTATAAATTCTTGGATACAGCAGTGTTAGTACCATCAAGAagtgggagaaagaaaagagtgatgaaaaaaataaagcattaaaaaatgCAGTCTCGCTAATGTAACTATTCAGTGCATTTTTCTCATTGATGTTCAAAGTGCCGATTTGGTAACATGGAGAGAATTTCAGTACTTTGCGAAAACTTCTCTCTAAAAATGTGGTGTTTGCATACCAACCACAATTCTATGAGAAAgaaatttcttttaaagaaaacaaaaaaaaaggagggaaaaaatgcacttttttgtcACTGATCCATCATGGCACCTTTGTtgatgtttctgtctctgtatgaggtacttctttaaaaaagtaaagacTAGtaattttttcagttttttgcTGTGTTGCACAGTAGCACCATAGAGTTGAACTTGAAGATAATGCACCACTAGAATTCCACTTGTTCTCGATGTAACTGTTGCAGTCGCTGTGGTGATCACCCCTGATAAGGGGTCATGCTGTATTCAGCATTGCTATGTTACGTCCTCTTCATACACACAATACAGCGACTCACGCGTGTCTGGAGATTCCCTGCTTTCAGCGTCTCAGATTGTGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75791 lncRNA upstream 122816 13570002 ~ 13572833 (+) True G63976
TU75739 lncRNA upstream 190930 13504460 ~ 13504719 (+) True G63936
TU75682 lncRNA upstream 227923 13459362 ~ 13467726 (+) True G63898
TU75685 lncRNA upstream 278208 13417221 ~ 13417441 (+) True G63901
TU75666 lncRNA upstream 307695 13387598 ~ 13387954 (+) True G63889
TU75843 lncRNA downstream 7472 13755544 ~ 13759751 (+) True G64025
TU75876 lncRNA downstream 155369 13903441 ~ 13909459 (+) True G64049
TU75933 lncRNA downstream 264026 14012098 ~ 14012315 (+) True G64102
TU75934 lncRNA downstream 265147 14013219 ~ 14013418 (+) True G64103
TU75936 lncRNA downstream 269214 14017286 ~ 14017669 (+) True G64105
XM_026937025.2 mRNA upstream 11050 13647181 ~ 13684599 (+) False arhgap36
XM_026937028.2 mRNA upstream 11051 13654955 ~ 13684598 (+) False arhgap36
XM_026937027.2 mRNA upstream 11052 13658046 ~ 13684597 (+) False arhgap36
XM_026937026.2 mRNA upstream 11495 13647182 ~ 13684154 (+) True arhgap36
XM_026936257.2 mRNA upstream 49665 13573635 ~ 13645984 (+) False nhsl2
XM_026936438.2 mRNA downstream 50108 13798180 ~ 13880674 (+) False col4a6
XM_026936439.2 mRNA downstream 50108 13798180 ~ 13880674 (+) False col4a6
XM_026936440.2 mRNA downstream 50108 13798180 ~ 13880674 (+) False col4a6
XM_026936441.2 mRNA downstream 50108 13798180 ~ 13880674 (+) False col4a6
XM_034303948.1 mRNA downstream 50257 13798329 ~ 13880674 (+) True col4a6
XR_003404009.2 other upstream 133383 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 220612 13470769 ~ 13475037 (+) False LOC113539889
TU75687 other upstream 276953 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1400526 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1998354 11644902 ~ 11697295 (+) False si:ch211-200p22.4
XR_004578085.1 other downstream 507672 14255744 ~ 14269340 (+) False brms1
XR_004578093.1 other downstream 883958 14632030 ~ 14658936 (+) False zgc:194930
XR_003403994.2 other downstream 2275123 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 2562141 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 2619884 16367956 ~ 16370684 (+) False LOC113540582

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00069317 True 1280 lncRNA 0.36 2 NC_007118.7 51193155 ~ 51195855 (-)