RNA id: TU75791


Basic Information

Item Value
RNA id TU75791
length 2832
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G63976
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13570002 ~ 13572833 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaagatttaaaaataagtgtCAATTGTCAATAACAGTAAATATGTGAaaccatttaaataattaaaatttaactAGTTTTGTAACTGATTTTCTAAATAGTTTGGGAATTGCTGTATGTCTCGGGCCAGGAGTCCCCACGGGAAACTTAACAGATTCcttcatgtttaataatgtcCTAGTGGAAGTTAATCCACCACTtagttaattttaataatctccTTGTTGAAGGAGCTGATTGACATTACTTGACTTTGCAGCGAATGCAAGATGTGTGCACAACAGCAAACCATAGCTAGACTTAGGGTTGGTGTAGTACTCGTTAGAACTGTTTAGTAGTGGCTAAAATGATCACTTAAATTACTAAACCTGTCCAACATGTGAAGTCGGTAAACTGTAAGTCTAAATGAAAAGTCATGCAGAATGGATTTATAATCTATTTCTCAAATACAAACAGAATTAGACTGTCACGGAATATATACAGATTTACAGTATAAACCAAATAGACCAGCAGTACAATGTATAAGGAGCTTGTGCTTTAATATGGCaataaaagtcaaaaaaaaaaaatcattgttgaCAATATTAAAATTAGGAGGCCAAAAGTCATGTTTCACCTTTAATGAAAACAGTTGTACTGCTATAGTGCTACAAACACCTATACAAATCAGAGACTTGCAAGTTGAAAGTTAAATTGCAATCACATCACTTTACAATGAAAACAATAGTATTGTAATGGGTCACCATGACACTCCAAAAGGTAGTGAGCACATCTGGAGAAATGTAAATTGTGTTAAATGTGCTCAGGAGAGCTGCATCACCTTGAAAGCTGTAATGTGAGCTAAAGTAAATGAAGCTCAgccttgtcttgtttttttagACATAATAGCtcatacacagatcagccataacattaaaaccacctgcctaatattgtgtaggtcccccttgtactgccaaaacagctctgatccatcAAGTCAtggacctctgaaggtgtgctgtggtatctggcatcaagatgttagcagcagctcctttaagtcctgtaagttgtgaggtggggtctccgtggattggacttgtttgtcctgCACGTCCCACAGgcgctcgattggattgagatctggggaatttggagccCAAGTCAACACCTGGAACTCTGTcattttcctcaaaccattcctgaacaatttttgcagtgtggcagggtgcattatcctgctgaaagagaccactgccattagggaataacgttgccatgaagaggtgtactATATCTGCTATGATGTTTAGGTAGttggtacgtgtcaaaataacatccacatgaataccaGGACTCAAAGTCTCCCAGCAGAAaacccacaagacctgctgttttggagatgctctgacccattCATCTAgctatcacaatttggcccttgtcaaagtcacttagatccttacgcttgcccatttttcctgcttccaacacatcaacttcgagaataGACTGTTCACtcgctgcctaatatatcccaccccttgacaggtgccactgtaatgagataatcaatttCACCTGccagtagttttaatgttaatggCTGATGGGTGTATGTGCTGGTGTTATCATGTTCAGTTGCTCACAGACTGTAGTGATTGAGGCTGAGTAGGGCCTAGTGAGTGGCTGCTTCCCAATAACCCTGATGCCTCTTTGAATCCTCAGCTCCTCAATCCTACATCCCTCAGCATGTGGCCCAGAAATGCAGATttgttacatcatcaataagtGAAGTTGCTTTAGAATGTTGCTCCAGTGAGCAAGGCAGATATGTTTGTCCTGGATTCTTCCTGTCCCTATTTCATTTCCTCAGAGCAAGGAGCTAAGAAGTGTGGAAGTGACACAAGGTaagggaaataaaatgaatgagatGCACATAGAGACTCCATTTAAAGGTGATGTTCTACTGGAACTTGACGTGAGCCGCTGAAGACCCACAGAGATGAAGAGGGACACTGATGTTTTATGTATGGGTTTATGTAACCATAAAATTTATGTCAGTCAGAATCTGGGTGTGTTTATTTCTCCAAGATGAGTGTGGATGCACATTACGTATAATTAAAGATCCATGCAGAATTAATACTACGCTACTTTAGACAAGATCCAGTATATGCCGAGTTAACGAGTCAGGAGGTGCTGCGTCACAGGAGGAATGTATActtgcatgtgaatgtgtgtgttccacttGGCTGTGGCTCTTCTCCAGGCCATATGGGTCCTGCTGCGTTTCAGCCTGTTTGTCCTGCAGCCTTTGGCCTGATGGTCCACAGCACTGCAGCATGGCTCGGCTCATCCCACTCCAACACGCTGTTGGGGCTTGTGTCCAGAGTAAGagacacacacctacacagtATCTTGTGTCCTTGAGTTTAATATATATGCTTCTGCTTCTAGGTGGCTTtagaaagcatttttatttcattatgctACAATACTTTGTGCTCATAACCACATTTACACTCTTGGGATGTGGTGGCCTAAATGTGTAagcattattattgttgtaagTGCATCTATTATGAGAATGGACCTGACATGCTTTTTGCAGCAGGTCTGTTGTCTTTTTCGTCAAAGGACTTTTTTTGTGCAATGGCGCCCTTTGAAAATGAAACGTGAAGCTTGCCAGACTCCAGCACTGTTCCTGCACCACTCACATCTCCCCcttgtgcaaaataaaacacagcccTTTGATCTGATTACACAAGAGCTCTATGGTTTCAGAATCACTTTTggccaatatatatatatatgcacagagaaacagagtgaagaagaaaaaggttGGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75739 lncRNA upstream 65283 13504460 ~ 13504719 (+) True G63936
TU75682 lncRNA upstream 102276 13459362 ~ 13467726 (+) True G63898
TU75685 lncRNA upstream 152561 13417221 ~ 13417441 (+) True G63901
TU75666 lncRNA upstream 182048 13387598 ~ 13387954 (+) True G63889
TU75437 lncRNA upstream 284168 13284541 ~ 13285834 (+) False slc16a13
TU75783 lncRNA downstream 122816 13695649 ~ 13748072 (+) False G63973
TU75785 lncRNA downstream 122816 13695649 ~ 13748072 (+) True G63973
TU75843 lncRNA downstream 182711 13755544 ~ 13759751 (+) True G64025
TU75876 lncRNA downstream 330608 13903441 ~ 13909459 (+) True G64049
TU75933 lncRNA downstream 439265 14012098 ~ 14012315 (+) True G64102
XM_026937097.2 mRNA upstream 403 13564728 ~ 13569599 (+) True rps4x
XM_026936564.2 mRNA upstream 8465 13558623 ~ 13561537 (+) False cited1
XM_026936565.2 mRNA upstream 8465 13559315 ~ 13561537 (+) False cited1
XM_026936560.2 mRNA upstream 16054 13533817 ~ 13553948 (+) True hdac8
XM_026936562.2 mRNA upstream 16054 13534154 ~ 13553948 (+) False hdac8
XM_026936255.2 mRNA downstream 801 13573634 ~ 13645984 (+) True nhsl2
XM_026936257.2 mRNA downstream 802 13573635 ~ 13645984 (+) False nhsl2
XM_026936258.2 mRNA downstream 10985 13583818 ~ 13645984 (+) False nhsl2
XM_026936259.2 mRNA downstream 37562 13610395 ~ 13645984 (+) False nhsl2
XM_026936260.2 mRNA downstream 42782 13615615 ~ 13645984 (+) False nhsl2
XR_003404009.2 other upstream 7736 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 94965 13470769 ~ 13475037 (+) False LOC113539889
TU75687 other upstream 151306 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1274879 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1872707 11644902 ~ 11697295 (+) False si:ch211-200p22.4
XR_004577999.1 other downstream 132743 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 682911 14255744 ~ 14269340 (+) False brms1
XR_004578093.1 other downstream 1059197 14632030 ~ 14658936 (+) False zgc:194930
XR_003403994.2 other downstream 2450362 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 2737380 16310213 ~ 16319166 (+) False LOC113539780

Expression Profile