RNA id: TU75843


Basic Information

Item Value
RNA id TU75843
length 2029
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G64025
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13755544 ~ 13759751 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCCTCATTAAAGCATAACTCTTTTCAACAGTTGCTACAGAATTATTCCAGTATCCTTTATTTGATGTCCATGAGACTCACCGTAAAACCTTGTGGTCCAGTGTCTCCCTTCTGTCCAGGTAAACCAGGTGATCCAGGATTTCCAGAGTAGCCTTTCTCACCCTTCACTCCTCCAGAACCTGGTGGTCCACGGGGCCCCTCTGGGCCAGGAGGACCTTTATGACCTTCTGGGCCTGTCACCAAGCGTCATCAGGAGAAGGTGGAGCCACACCACAGGAGACAGGAAATAAAGGTCAAATGCACAATGCATCTGCGCATAGATTTAGCCAAACAGACACCTGCCAAAACTGGACTCTTCgtttaatatgtatataatgtctttattaattaaggttttatatttacagctaATCTAATAAATGCCTctgctttttttcattctttaaatAGATTAGAAGAAGGAACCCAAACTACCAGGGTTCTAGAAATTTTAATGGAACAATTTAATATTGtttcagattttcttttaaacattttggacaaCTTTGTATTTGTTCATTCTGACTGAGGAAGCCCATATTGGACAGTTCTGTAATGGCTTtacacatcataaatattaacattttcacaTGCAGGTGAAGACACGCACATAAACGgaaacacacagcattacactACTGATCATCCTCTTTTTGAATCACTGGATTCAGCATTACACCAGACAGACATCACActgtggagagaggaaaagagctTTCGTTCCTCAGGAAAAAAGAGGGGTAAGGGAGTCGAGACACATGAGGAAGAATGGATAGGTGAACAGATAAACAGTTGAAGAGCGTGGACACAGTGTGGATGGATCCATGCTGGTTGGGCCCTGTTTGTGTCTCAGTGAAACACACTGATTTGTGCGTGCAAACCTCTACCTCTTACAAACGTTTCTGatatacacaaataataaaagaaggTGATTGAAGGCATGCCCTGGAGTAAGTCaagcactgtgtatgtgtgtagtgctcACTAACTTTGTGCTCCCTATTAGTTTTGTGCAATATGATATTGAGACTTGTGATGATTTGTGCAACATCCATGCAAATCAGTCCCATGACTAAACACATTTAAGATGGCCTCTCTACTGTCTGGTTCTTTCTAGTGTTTAAAAGAGTTGATATTTAAATTATTCTCAGGTGTATCACTTGGAGATCTGGTAGAGCGAGACAGTAGATCTGACCAATGAAAAGCATAACCCTGTTCCTGGAGATGTGATATCCTGCAATATATATAATCTAAAACACCAGAGCTGGTTCATTAAGCTTTTCATGAGCatcatttttggatttttatcCCATTTTCATCCAATTTGGTCAGTTTAACAAATTCCTCCCACTAGGTATCACATCACACcctcacatcacatcacaactATCAAGTGGAGAGGATGAAAactagcacatgcttcctctgaaaTCTGTGAAGCCAGCCTGcatatcttttcaaactgctgctaatgctgTATCACAGAGCAACTGAAAACACAAAGGAAAAAGCTAACTGTCACTTCAAaatacatgagttcacagatgccgatgattggctagtgtctcccTGATTGAAAGGACAGAGTAATGCCCATCCCTCCTACcctgagagcacagccaattttgctctcttggactctctGTCACAGATGGCTGTGAAATTGCTGGGATTCGAACAAGAAATATCTTAATATTAGAACCAAGTTTATTAAGGTAGGGCTGAATTTACACTGTGCAAAGTACACAATCTCATGGAACAGGGTCAGCCACTATGATGTGTATGAGATAAGGGCCAACCTACCTCCTCTTCCTGGTGGTCCAGGGGGACCCTGGAAGCCTTTAGGCCCTTGAATGGACTGACCCGGAGGACCAGGGGGCCCTTGAGAACCAGGGCTGCCTGTTGCACCAGCGGATCCTATATCACCCTTTGGTCCAGGGAAACCAGGGCTGCCAGGCTGGCCAGGAAGGCCAGGGTCTCCTTTCTGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75783 lncRNA upstream 7472 13695649 ~ 13748072 (+) False G63973
TU75785 lncRNA upstream 7472 13695649 ~ 13748072 (+) True G63973
TU75791 lncRNA upstream 182711 13570002 ~ 13572833 (+) True G63976
TU75739 lncRNA upstream 250825 13504460 ~ 13504719 (+) True G63936
TU75682 lncRNA upstream 287818 13459362 ~ 13467726 (+) True G63898
TU75876 lncRNA downstream 143690 13903441 ~ 13909459 (+) True G64049
TU75933 lncRNA downstream 252347 14012098 ~ 14012315 (+) True G64102
TU75934 lncRNA downstream 253468 14013219 ~ 14013418 (+) True G64103
TU75936 lncRNA downstream 257535 14017286 ~ 14017669 (+) True G64105
TU75926 lncRNA downstream 282217 14041968 ~ 14042414 (+) True G64095
XM_026936675.2 mRNA upstream 16634 13724314 ~ 13738910 (+) True LOC113540276
XM_034303628.1 mRNA upstream 36090 13705417 ~ 13719454 (+) True gc2
XM_034303627.1 mRNA upstream 36090 13705576 ~ 13719454 (+) False gc2
XM_034303629.1 mRNA upstream 36090 13705576 ~ 13719454 (+) False gc2
XM_026936929.2 mRNA upstream 37649 13705576 ~ 13717895 (+) False gc2
XM_026936438.2 mRNA downstream 38429 13798180 ~ 13880674 (+) False col4a6
XM_026936439.2 mRNA downstream 38429 13798180 ~ 13880674 (+) False col4a6
XM_026936440.2 mRNA downstream 38429 13798180 ~ 13880674 (+) False col4a6
XM_026936441.2 mRNA downstream 38429 13798180 ~ 13880674 (+) False col4a6
XM_034303948.1 mRNA downstream 38578 13798329 ~ 13880674 (+) True col4a6
XR_004577999.1 other upstream 36090 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 193278 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 280507 13470769 ~ 13475037 (+) False LOC113539889
TU75687 other upstream 336848 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1460421 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_004578085.1 other downstream 495993 14255744 ~ 14269340 (+) False brms1
XR_004578093.1 other downstream 872279 14632030 ~ 14658936 (+) False zgc:194930
XR_003403994.2 other downstream 2263444 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 2550462 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 2608205 16367956 ~ 16370684 (+) False LOC113540582

Expression Profile