RNA id: TU75933


Basic Information

Item Value
RNA id TU75933
length 218
lncRNA type intronic
GC content 0.33
exon number 1
gene id G64102
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14012098 ~ 14012315 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGCAAGCTGGTTTTGTTATTACTTTACAATAAACACTGTGGGCCTGCAAGGCAATATGTTGTACCTTATTTGCCTGTTTACAACACTGAATCTCAAAACAAAAGTAGTACTAGTTCTAATCACAATTAATGTGAtacactataaaatatttaaattataacaCGCTGACTTACTAAAAATGTGTTGCATTGTTTTGGGGACTCCCCTAAAATTTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75876 lncRNA upstream 102639 13903441 ~ 13909459 (+) True G64049
TU75843 lncRNA upstream 252347 13755544 ~ 13759751 (+) True G64025
TU75783 lncRNA upstream 264026 13695649 ~ 13748072 (+) False G63973
TU75785 lncRNA upstream 264026 13695649 ~ 13748072 (+) True G63973
TU75791 lncRNA upstream 439265 13570002 ~ 13572833 (+) True G63976
TU75934 lncRNA downstream 904 14013219 ~ 14013418 (+) True G64103
TU75936 lncRNA downstream 4971 14017286 ~ 14017669 (+) True G64105
TU75926 lncRNA downstream 29653 14041968 ~ 14042414 (+) True G64095
TU76204 lncRNA downstream 44212 14056527 ~ 14056887 (+) True G64308
TU76367 lncRNA downstream 282687 14295002 ~ 14295261 (+) True G64459
XM_026935809.2 mRNA upstream 113593 13891113 ~ 13898505 (+) True LOC113539767
XM_026935907.2 mRNA upstream 122514 13882312 ~ 13889584 (+) True ankrd46b
XM_026936440.2 mRNA upstream 131424 13798180 ~ 13880674 (+) False col4a6
XM_026936120.2 mRNA downstream 22892 14035207 ~ 14039607 (+) True nagk
XM_026936442.2 mRNA downstream 52179 14064494 ~ 14080036 (+) True hspa12b
XM_026937054.2 mRNA downstream 80179 14092494 ~ 14151289 (+) True slc8a4b
XM_034303973.1 mRNA downstream 217658 14229973 ~ 14253890 (+) True ppp1r14bb
XM_026936979.2 mRNA downstream 217667 14229982 ~ 14252612 (+) False ppp1r14bb
XR_004577999.1 other upstream 292644 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 449832 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 537061 13470769 ~ 13475037 (+) False LOC113539889
TU75687 other upstream 593402 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1716975 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_004578085.1 other downstream 243429 14255744 ~ 14269340 (+) False brms1
XR_004578093.1 other downstream 619715 14632030 ~ 14658936 (+) False zgc:194930
XR_003403994.2 other downstream 2010880 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 2297898 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 2355641 16367956 ~ 16370684 (+) False LOC113540582

Expression Profile