RNA id: TU75936


Basic Information

Item Value
RNA id TU75936
length 384
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G64105
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14017286 ~ 14017669 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCGATCCTAATGGAACAACAGAACCAAGACATGGCTCAAGTATAGGAAattatgcataaatattattatgGTCACATTATGGCCACATGCTAACTTTGCTTTTGTGGCACTTTTACAAAAGTGGCAAAAAGGATTAGGAATTGTAGAGGTAATGACTTTAATGGCATCTTAATGACTCcacagtggtgcagcgggtagagctgctgccttacagctccagggttcccagctcaaccctgagctcaggttactgtatGTGTCCGCGAGAGttctcctcccaaaaacatgccaatagtTGGACTGGctttgctaaattgcccctagtgtgtgaatgtgcatggtgccctgtgatggaccaGGTTGTATTTCCACCTCAAACCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75934 lncRNA upstream 3868 14013219 ~ 14013418 (+) True G64103
TU75933 lncRNA upstream 4971 14012098 ~ 14012315 (+) True G64102
TU75876 lncRNA upstream 107827 13903441 ~ 13909459 (+) True G64049
TU75843 lncRNA upstream 257535 13755544 ~ 13759751 (+) True G64025
TU75783 lncRNA upstream 269214 13695649 ~ 13748072 (+) False G63973
TU75926 lncRNA downstream 24299 14041968 ~ 14042414 (+) True G64095
TU76204 lncRNA downstream 38858 14056527 ~ 14056887 (+) True G64308
TU76367 lncRNA downstream 277333 14295002 ~ 14295261 (+) True G64459
TU76370 lncRNA downstream 278601 14296270 ~ 14296472 (+) True G64462
TU76581 lncRNA downstream 662537 14680206 ~ 14680813 (+) True G64668
XM_034303361.1 mRNA upstream 1161 13973996 ~ 14016125 (+) False m1ap
XM_034303356.1 mRNA upstream 1161 13991927 ~ 14016125 (+) False m1ap
XM_034303360.1 mRNA upstream 1161 13992582 ~ 14016125 (+) False m1ap
XM_026936151.2 mRNA upstream 1161 13992715 ~ 14016125 (+) True m1ap
XM_034303359.1 mRNA upstream 1161 13992715 ~ 14016125 (+) False m1ap
XM_026936120.2 mRNA downstream 17538 14035207 ~ 14039607 (+) True nagk
XM_026936442.2 mRNA downstream 46825 14064494 ~ 14080036 (+) True hspa12b
XM_026937054.2 mRNA downstream 74825 14092494 ~ 14151289 (+) True slc8a4b
XM_034303973.1 mRNA downstream 212304 14229973 ~ 14253890 (+) True ppp1r14bb
XM_026936979.2 mRNA downstream 212313 14229982 ~ 14252612 (+) False ppp1r14bb
XR_004577999.1 other upstream 297832 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 455020 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 542249 13470769 ~ 13475037 (+) False LOC113539889
TU75687 other upstream 598590 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1722163 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_004578085.1 other downstream 238075 14255744 ~ 14269340 (+) False brms1
XR_004578093.1 other downstream 614361 14632030 ~ 14658936 (+) False zgc:194930
XR_003403994.2 other downstream 2005526 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 2292544 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 2350287 16367956 ~ 16370684 (+) False LOC113540582

Expression Profile