RNA id: TU76204


Basic Information

Item Value
RNA id TU76204
length 361
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G64308
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14056527 ~ 14056887 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gttgggtccatggattcatgccgttggtgccaaattctgaccccaccatctgtgtgcttcagcagaaatcgagattcatcagaccaggctaagTTTTTCcggtcttcagctgtccagtttgggtgagcctgtgcccactgcagcctcagctttctgttcttggctgacagaagtggaacccaacgtggttttcttctgttgtagcccatctggctcaaggttcaacatgctgtgaattctgagatgcttttctgctcaccacaattgcaCAGAGTGGGTATccgagttactgtagcctttctgtcagcttgaaccagtctggccattctccgttgacttctctcatcaacaaggcgtttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75926 lncRNA upstream 14113 14041968 ~ 14042414 (+) True G64095
TU75936 lncRNA upstream 38858 14017286 ~ 14017669 (+) True G64105
TU75934 lncRNA upstream 43109 14013219 ~ 14013418 (+) True G64103
TU75933 lncRNA upstream 44212 14012098 ~ 14012315 (+) True G64102
TU75876 lncRNA upstream 147068 13903441 ~ 13909459 (+) True G64049
TU76367 lncRNA downstream 238115 14295002 ~ 14295261 (+) True G64459
TU76370 lncRNA downstream 239383 14296270 ~ 14296472 (+) True G64462
TU76581 lncRNA downstream 623319 14680206 ~ 14680813 (+) True G64668
TU76586 lncRNA downstream 705448 14762335 ~ 14762596 (+) True G64673
XR_004578083.1 lncRNA downstream 920439 14977326 ~ 15011493 (+) True LOC117597182
XM_026936120.2 mRNA upstream 16920 14035207 ~ 14039607 (+) True nagk
XM_034303353.1 mRNA upstream 40402 13993592 ~ 14016125 (+) False m1ap
XM_026936442.2 mRNA downstream 7607 14064494 ~ 14080036 (+) True hspa12b
XM_026937054.2 mRNA downstream 35607 14092494 ~ 14151289 (+) True slc8a4b
XM_034303973.1 mRNA downstream 173086 14229973 ~ 14253890 (+) True ppp1r14bb
XM_026936979.2 mRNA downstream 173095 14229982 ~ 14252612 (+) False ppp1r14bb
XM_026937055.2 mRNA downstream 198857 14255744 ~ 14269340 (+) True brms1
XR_004577999.1 other upstream 337073 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 494261 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 581490 13470769 ~ 13475037 (+) False LOC113539889
TU75687 other upstream 637831 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1761404 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_004578085.1 other downstream 198857 14255744 ~ 14269340 (+) False brms1
XR_004578093.1 other downstream 575143 14632030 ~ 14658936 (+) False zgc:194930
XR_003403994.2 other downstream 1966308 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 2253326 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 2311069 16367956 ~ 16370684 (+) False LOC113540582

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_00076210_00177393.mRNA False 10354 mRNA 0.40 43 CI01000029 75630 ~ 178905 (-)