RNA id: TU77079


Basic Information

Item Value
RNA id TU77079
length 1554
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G65115
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 15869198 ~ 15870771 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCTAatcttttttttggacaaaaagAGGCTTACAATTATGTCACACGTAACAACAAGGCCAGCCTGAATGCCTTCACACCTCACTACttgtttggtcttttttttaaaaaaaaaaaaaaaacaaaagagaacaaTCCAAGCTCAATAAATATTTACTCGCATACAAGACAACTTCATGAGAAATCACTCGGTAATCAGACTTCACCTTTTTACTCCAACCATGCACGACATctttctgcatgcatgagcgtGAACAAAAGTTCAACATGTCTTTTTTCATGCCAAAAAGCCAGAAAACAGATCGGGACATCCAACAGAAGATGCCAGAATGGACTGACACATGTATGGTTAATTGTGGTAGCAGCCACAATGAGTATTAAATCAGCagatgtggcaaaaaaaaataaaaattctttacTTGTGTAAAAGAGAacccattttatttaaataaatcttaataGATAATCTGATAATAGCTGAAGTGTAGCTTcaaattctttactcaagttAAATTAGAAAATCCTACATTTACTTAACATATTGTTGCGTCTTTGGGGAAGAAGAAAGGAAGTAGGTTGACCAGGAAGTAAAAACAATGCACTTGCTCTTTTATTGGTAAATGAACCCCTACAGCACAACACGGGCTTGGTGATTAGCCACAGAACTGCTAAGCTAGGGAGAAACAATTGGGGGTAACAAAACCCCCAAGACTCCCAAAGAATGGTAAGTATAAACAAACACCAAATAACATGCTGGAGTAACACAGCCAGCACAGATATCCCGTGAACACACTTCTTTTGCAACAGCAAACACGAAGTCTAACAAACAAAGGAATTAACTACCACATTAATGGCAGCCACAGGGGCTCAGGGGTACGCAAATAAGCTCCTGCAAAGGTGCAAAGCTACAGCAACGCTACAGTGTGAAAGTAAAAGTCGAcctcaaatcacacaaatgTCACCTTATCactttacatatatacacactatatatatagatagatagatagatagatagagtactatgcaaaagtcttaggcaccctgtGTTTTTAAgaacaaactttgttacagatttttattttatgacttctacattattgattcagtacaaaaacattttagatttcctaacattagttttccagaacaaaattaaatgttacagaaacatgtttgtatgtcagtaaagaaagcagcagattacataagagacacttttcagacaaaaaaacataatgaaggctgctgggttttgctgcaaaaataagaagcgagtgtgacagtcaaagtctccagaagaactgtggctgcttctgcaagatgctcagtaacacttacagctcatttccttataaaactgcacacaatgtacctgagactattatttttcttaaagcgaaggatcgtcacaacaaatattgactttgttaaatttattactgtttactgctctttatagtattttttcttaattgtagaaacatttagtttcattatttttgaaggcttcattgctctacagcatttctttgcatgtgcctaagactttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578089.1 lncRNA upstream 312274 15506292 ~ 15556924 (+) True LOC117597190
TU76906 lncRNA upstream 667670 15201309 ~ 15201528 (+) True G64963
XR_004578083.1 lncRNA upstream 857705 14977326 ~ 15011493 (+) True LOC117597182
XR_004578084.1 lncRNA upstream 857705 14977326 ~ 15011493 (+) False LOC117597182
TU76586 lncRNA upstream 1106602 14762335 ~ 14762596 (+) True G64673
TU77137 lncRNA downstream 130384 16001155 ~ 16001461 (+) True G65170
TU77152 lncRNA downstream 149086 16019857 ~ 16055145 (+) True G65184
TU77172 lncRNA downstream 191317 16062088 ~ 16063461 (+) True G65199
TU77337 lncRNA downstream 352647 16223418 ~ 16231115 (+) True G65335
TU77409 lncRNA downstream 521358 16392129 ~ 16392363 (+) True G65382
XM_026936678.2 mRNA upstream 900597 14889300 ~ 14968601 (+) True zmp:0000000660
XM_026937085.2 mRNA upstream 1039287 14824102 ~ 14829911 (+) True paqr9
XM_034303978.1 mRNA upstream 1107633 14686254 ~ 14761565 (+) True adam19a
XM_034304075.1 mRNA upstream 1221958 14638490 ~ 14647240 (+) True zgc:194930
XM_034304076.1 mRNA upstream 1221959 14632731 ~ 14647239 (+) False zgc:194930
XM_026936099.2 mRNA downstream 33584 15904355 ~ 15916921 (+) False cckar
XM_034304111.1 mRNA downstream 38737 15909508 ~ 15916921 (+) True cckar
XM_026936548.2 mRNA downstream 121404 15992175 ~ 16000945 (+) True plaa
XM_026936290.2 mRNA downstream 152423 16023194 ~ 16036384 (+) False LOC113540079
XM_026936288.2 mRNA downstream 152424 16023195 ~ 16039984 (+) True LOC113540079
XR_004578093.1 other upstream 1210262 14632030 ~ 14658936 (+) False zgc:194930
XR_004578085.1 other upstream 1599858 14255744 ~ 14269340 (+) False brms1
XR_004577999.1 other upstream 2149744 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 2306932 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 2394161 13470769 ~ 13475037 (+) False LOC113539889
XR_003403994.2 other downstream 152424 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 439442 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 497185 16367956 ~ 16370684 (+) False LOC113540582
XR_003404110.1 other downstream 889748 16760519 ~ 16760583 (+) True LOC113540740
XR_003404111.1 other downstream 889978 16760749 ~ 16760819 (+) True LOC113540741

Expression Profile