RNA id: TU77137


Basic Information

Item Value
RNA id TU77137
length 234
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G65170
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16001155 ~ 16001461 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTAACATGTAACTATACAACATGAAAGCTTGATATTCACTGTGTTAGAAAAGCAGACTTAGTaaggttttagacattttacatatatagtCCTGTTATACCTGTAGACTGACAAACAAAATATACTTTCTTCATCATAAACAAAACACCACATTTATGATTCTTCTCCTTGAACTTTATTTATCAAACTCTTCTCACGTGCAGTTAACCCCAGGTTATACAGTTCATATTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77079 lncRNA upstream 130384 15869198 ~ 15870771 (+) True G65115
XR_004578089.1 lncRNA upstream 444231 15506292 ~ 15556924 (+) True LOC117597190
TU76906 lncRNA upstream 799627 15201309 ~ 15201528 (+) True G64963
XR_004578083.1 lncRNA upstream 989662 14977326 ~ 15011493 (+) True LOC117597182
XR_004578084.1 lncRNA upstream 989662 14977326 ~ 15011493 (+) False LOC117597182
TU77152 lncRNA downstream 18396 16019857 ~ 16055145 (+) True G65184
TU77172 lncRNA downstream 60627 16062088 ~ 16063461 (+) True G65199
TU77337 lncRNA downstream 221957 16223418 ~ 16231115 (+) True G65335
TU77409 lncRNA downstream 390668 16392129 ~ 16392363 (+) True G65382
TU77422 lncRNA downstream 429000 16430461 ~ 16430686 (+) True G65395
XM_026936548.2 mRNA upstream 210 15992175 ~ 16000945 (+) True plaa
XM_026936099.2 mRNA upstream 84234 15904355 ~ 15916921 (+) False cckar
XM_034304111.1 mRNA upstream 84234 15909508 ~ 15916921 (+) True cckar
XM_026936678.2 mRNA upstream 1032554 14889300 ~ 14968601 (+) True zmp:0000000660
XM_026937085.2 mRNA upstream 1171244 14824102 ~ 14829911 (+) True paqr9
XM_026936290.2 mRNA downstream 21733 16023194 ~ 16036384 (+) False LOC113540079
XM_026936288.2 mRNA downstream 21734 16023195 ~ 16039984 (+) True LOC113540079
XM_034303656.1 mRNA downstream 21734 16023195 ~ 16039984 (+) False LOC113540079
XM_026936291.2 mRNA downstream 38744 16040205 ~ 16050628 (+) True htra3b
XM_026936832.2 mRNA downstream 84216 16085677 ~ 16092460 (+) True ttc5
XR_004578093.1 other upstream 1342219 14632030 ~ 14658936 (+) False zgc:194930
XR_004578085.1 other upstream 1731815 14255744 ~ 14269340 (+) False brms1
XR_004577999.1 other upstream 2281701 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 2438889 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 2526118 13470769 ~ 13475037 (+) False LOC113539889
XR_003403994.2 other downstream 21734 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 308752 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 366495 16367956 ~ 16370684 (+) False LOC113540582
XR_003404110.1 other downstream 759058 16760519 ~ 16760583 (+) True LOC113540740
XR_003404111.1 other downstream 759288 16760749 ~ 16760819 (+) True LOC113540741

Expression Profile