RNA id: XM_026936997.2


Basic Information

Item Value
RNA id XM_026936997.2
length 1565
RNA type mRNA
GC content 0.39
exon number 3
gene id leap2
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16592562 ~ 16594505 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATGTCACAACTGGGTAcaaaaaggcagagagagacagggagggaaGCAAAGAGAGATCGAGGTGAAGCCTGGCAGACTGGGTGTCTCTGTGGTGACTGGAAAGTATATGAGGCTGGAGATAGTGACAATAGCCACTGTTGCCTGAGGTTACAGATAGAGTTCTGAGAAAGTTGTGCTAAATCCCATTCTTTCAGCATGAAGGAGCAAAGTCATTTCAGCAGAAAAGCTGTTGCAGCCTGGTGCTTGGTGCTTATGGTGCTCATTCAACAGGTGGCTTCCAGTCCTGTTCCAGAGATGGAGGCCGCCTCAGGCTCTGTGCAGGGAGTTCAGAGGTCACTCAGGAGAATGGCCCGTATGACGCCCCTTTGGAGAATCATGGGTACTAAACCCCATGGGGCATACTGCCAGAATAACTATGAGTGTTCCACAGGAATATGCAGGAAAGGACACTGCTCCTTTGGCCAACCTATAAATTCCTAAGAGTGGACAGGCTTACTTCTTCTCCAGCCCAAATGTCACGGACTGTCCAGAACCCTGCATTTAATGGAATCGTACAAAAAAGGCTTACTTATTGGTGGAGGAAAAAGTAATGTGCAATTTAATGTCAGAAATTAGGCAAGCCAAAGACTAAAGTTAGTTATGTCTAAGTTGATAGCGTGTAGGGTGAAACAGTTTTTAGATGGGCAACTAACTGGCTTAAATCATAATCACACAAGTTCATATATGCATGAATTCATAATAaaagtatacatttttttttccagtttaacaACATAAACCTCATAACCTACAGTATAATACACTACGTGTATACTAttgtgctttattattattattattgttattattttatttaatattcaattttATCACATACTGTGCACATATCAGATTTTGGGTGGTGCtagtgatggtgtgatggatAAAATACAGCTAGAGTTGGTTATCTAAACACATACTGAGCCTTGAACTAGGCTGTTTCTGGAAGACCAGCTCTTGGTATTAGATCACGTAATGCCTGGATGCTGCACAAGTAGAGCTGGCAGCAGGTCGCATGTACAGCCTGTGTAGACTTTCAACCCGAGTGTCATTGAACTACAGATATGCttcagcagaaagagagagagaaagtgtgattAACAGTGCAAAGATTAAAGGCCTTAGTTGAATGAATTAAGGTACTGTTATTGCAGTTGCACAGCTTACTTCTGTTTCCTGATGTTTTAGTGCTTTTTTTATGTGGAAAACTTTTTCtggctttttatttatgtaagtgCTGATACAGACCTGACATTTGTCATACATCTCACATAACACTGTTAGAATATTCAAGATTCTTCTGCTGgataatctatttattatatttgattattttgtatGCTTCAGTGTATGCTTTTGAGTGACTGAGAAAATGTTCTGAAACTGTTACCTTAGATGTTTAGTGACATCATTACTGAATGTATGAGTGTATTACTGAATGTATGAGAGTTGCTTTTGTGTATGCTACATATGATGTCTGAATGAAATaatattaactaaataaaagttttattatcAAACATA

Function

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77566 lncRNA downstream 140670 16451677 ~ 16451892 (-) True G65508
TU77541 lncRNA downstream 161044 16431136 ~ 16431518 (-) True G65494
TU77540 lncRNA downstream 163204 16429143 ~ 16429358 (-) True G65493
TU77538 lncRNA downstream 165155 16427201 ~ 16427407 (-) True G65491
TU77517 lncRNA downstream 219415 16369532 ~ 16373147 (-) True G65472
TU77804 lncRNA upstream 11502 16606007 ~ 16606592 (-) True G65700
TU77819 lncRNA upstream 80755 16675260 ~ 16676349 (-) False G65715
TU77820 lncRNA upstream 80755 16675260 ~ 16684591 (-) True G65715
XR_004577996.1 lncRNA upstream 134186 16728691 ~ 16735897 (-) True LOC117597072
TU77823 lncRNA upstream 141648 16736153 ~ 16737913 (-) True G65718
XM_026936842.2 mRNA downstream 8029 16566064 ~ 16584533 (-) True phka1a
XM_026936843.2 mRNA downstream 8030 16566065 ~ 16584532 (-) False phka1a
XM_026936098.2 mRNA downstream 28425 16552388 ~ 16564137 (-) True LOC113539955
XM_034303424.1 mRNA downstream 28821 16552388 ~ 16563741 (-) False LOC113539955
XM_034303398.1 mRNA downstream 56676 16528806 ~ 16535886 (-) True LOC117596996
XM_026937053.2 mRNA upstream 9304 16603809 ~ 16605628 (-) True bmp15
XM_026936350.2 mRNA upstream 54680 16649185 ~ 16653787 (-) True otub1b
XM_026935979.2 mRNA upstream 61435 16655940 ~ 16661187 (-) True fam113
XM_026936431.2 mRNA upstream 68624 16663129 ~ 16669417 (-) True adad2
XM_034303757.1 mRNA upstream 68624 16663129 ~ 16669350 (-) False adad2
TU77497 other downstream 169398 16419310 ~ 16423164 (-) True tnfsf12
XR_003404041.2 other downstream 520870 16055022 ~ 16071692 (-) False acox3
XR_004577994.1 other downstream 600677 15973579 ~ 15991885 (-) False smim20
XR_004578098.1 other downstream 688207 15879471 ~ 15904355 (-) False tbc1d19
trnap-ugg_2 other downstream 716664 15875827 ~ 15875898 (-) True trnap-ugg_2
TU77801 other upstream 9603 16604108 ~ 16605717 (-) False bmp15
TU78232 other upstream 806089 17400594 ~ 17402464 (-) True G66053
TU78241 other upstream 844988 17439493 ~ 17444174 (-) False rnaseka
TU78578 other upstream 999944 17594449 ~ 17634868 (-) True G66281
trnas-uga other upstream 1176645 17771150 ~ 17771231 (-) True trnas-uga

Expression Profile