RNA id: TU77754


Basic Information

Item Value
RNA id TU77754
length 2078
lncRNA type inter_gene
GC content 0.42
exon number 14
gene id LOC113539905
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16758227 ~ 16763461 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCAGCACGCGCTGAGTTAGTCTGCTGGAGCTGCAGCAGCTGGCCAGCATCTTTGACCTCCTGGTCCGGTTTGCTGTTAAAAGAAAGATGTTTATCTCAAGACTAACTTCTCAACAGCCCACTGTGCAGTGGGTGCCGATTTTGGCTGCAGACTGCATGTCCTTGAAAGACTATAGGTGATGCTGTGTAAAGTGAAAACCTGTTGCTGAACATGGCTTTGGCCAGTGATGAGTTCTTTGCCTGGAAGGCTGAGGATGTTTTCAGATAGGGAGTTATCCCTCTGAAGCACAGATGTTTGGCAAATTGAGTTCTTGGCTCAGAAGTGCTCGCTTGGCTACAGTTGTCATGGGttgcttttttctctcaaaaacagGCAAACTTGGTTTACAGTGGATTCCAGGTGGGCCTGGCAGTTTGTCTTAAGCAGctgAAACTGGATGACCCTGGGTGTCCTTTGGAACAAACATTTCCTTGAGATCTGTAAGCCTGTGCATGAAGATACTGGAGCTGCCCTGAATAAgGTCATCTCCGCTTCCACTGTACAACTAGTCAACTCGGTGCTGGAGGCCATGGACATGAAGTTATGCctgtaaatgctgtaaagaCTTAATAAAGCTCTTGAGTGAAATTATTGCCTCTTGTCTTCTGTGGTGCTGTGATTCCGACATGGTGATTGCATCATTTAAACCAGCAGGCAAAGCTTTTAAGACCTAGGATATTCTCCTTCCAAACTGGAGAAGTTACTTGCACTAGGCTTCAGCTGAAAGCTTGACATGTGCTAGGTTATGTAATGTTAGTTTGGGGGAGCAGAAGTGTCTTCCATGTATTTAAATTGTTCCATGGATGTAAATAAACCTGAATACTCCTGGCAGATGGATATGACCGGAATGGGCAAGTGACCTGTTCAGACATATTTGAGGGGGGCTAATATCTTGCACAGACTAGTTCAGACTTTGAGTGGTAAGATGACTTGCGTTTGACACTGGTTGTATATTTTGGTCCATTTCGTGTGAGGGTGAGAATCTGTTTATTGCACATGAAGTGGCAAATGTATAATTCATGATCTCCATTTACTGTTGGTGCTTACCAAGTGTCAGTTCCtttagaaaattaatttgaTTCTAACTTGTTGCACTTAAGGGTGAGTCGAGTGAAAACCTTGTGTAATGGATGGGGTTGCGTCAAGTTGCATCAACAACTTAATGAGTGGCATAACATGGTGACTCAGACTCTGCGAAATGCACCTTAAAACATCACCTGTTCTAGTGATTCTACAGTGTTGGGTTCACATTCTGATTAATCAAATTGCTGGgtttggaaaggaaaaaaaatacatgtagtTCCAATAATATTGTACAGCATGAATGTTTCCACAAGGGGAAAGAGTCTAGAACTGCAGTTGGAGGATTTACAATGATAACTAAGTTTACTTGCTATTAAGGAAATATCCATGCTGGGGAGCAATTTTCAAGAAACTAAATGTCAAGTctttcaaaattttattttgaaatgatcaCTTTACAAGCAGTGCAGAAATAATTTGATAAATGCATAAACCTCTGAAACCATATGAACAGCAAACAGTGGCCATTGGCTGAGGTTCAGGCATTAACAGCTTAAACACTGAATGCATTTCTCAACTTAATCCCAGAATGGTACAATTTGAACACTACAGTTTTCTCCTTAACACAAACATTTAGCCTTATGTGGGTTATGTGGCAACATGAGGCTAAAATAGGTCCTTAATAAAGGCACCAAGAGTGTTGCactgttaatgttactgatctgaaaggaaaaaaaaacaactataacCATGCAGACTGGTGCATTAGTTATGATGCCTCCTCAGGGTTATAACCATAGATAAGATGCTGTTTCTACAGTTAtatcacaacattaaaatacaagGCTCTTTTCTCAGTCTGCTGTAAAAATGCGAGCACCGATGTCATCCAGGAGCCAGTCTACGCCTGTCAGGAGGTTCTCTCCAGTCACTGCACTGCAGCCCACTATACACCAGTGATGTGTCTTAATCTCATCCAGAGCTAGCGCCTGTCAAAATAAGAGATTGTTATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77752 lncRNA upstream 6170 16751860 ~ 16752090 (+) True G65654
TU77740 lncRNA upstream 28908 16723895 ~ 16729352 (+) True G65644
TU77739 lncRNA upstream 80894 16676529 ~ 16677366 (+) True G65643
TU77679 lncRNA upstream 163803 16592447 ~ 16594457 (+) True G65601
TU77650 lncRNA upstream 180523 16569687 ~ 16577737 (+) True G65580
TU77765 lncRNA downstream 7144 16770605 ~ 16770843 (+) True G65663
TU78081 lncRNA downstream 572036 17335497 ~ 17392798 (+) True arrb2b
TU78094 lncRNA downstream 593877 17357338 ~ 17372139 (+) True G65938
TU78095 lncRNA downstream 595025 17358486 ~ 17359569 (+) True G65939
TU78075 lncRNA downstream 639098 17402559 ~ 17403879 (+) True G65927
XM_026936987.2 mRNA upstream 2853 16752137 ~ 16755407 (+) False sb:cb1058
XM_026936986.2 mRNA upstream 2853 16752820 ~ 16755407 (+) True sb:cb1058
XM_026935935.2 mRNA upstream 8136 16746698 ~ 16750124 (+) True b3gat3
XM_026937065.2 mRNA upstream 12903 16736078 ~ 16745357 (+) True naa40
XM_034303619.1 mRNA upstream 15009 16736070 ~ 16743251 (+) False naa40
XM_026937051.2 mRNA downstream 8938 16772399 ~ 16776829 (+) True batf2
XM_026937052.2 mRNA downstream 8938 16772399 ~ 16776829 (+) False batf2
XM_026937161.2 mRNA downstream 13433 16776894 ~ 16804016 (+) True ppp2r5b
XM_026936126.2 mRNA downstream 47939 16811400 ~ 16818534 (+) False zgc:101765
XM_034303409.1 mRNA downstream 52337 16815798 ~ 16818534 (+) False zgc:101765
XR_003404046.2 other upstream 387576 16367956 ~ 16370684 (+) False LOC113540582
XR_004578074.1 other upstream 439094 16310213 ~ 16319166 (+) False LOC113539780
XR_003403994.2 other upstream 718276 16023195 ~ 16039984 (+) False LOC113540079
XR_004578093.1 other upstream 2099324 14632030 ~ 14658936 (+) False zgc:194930
XR_004578085.1 other upstream 2488920 14255744 ~ 14269340 (+) False brms1
TU78354 other downstream 846243 17609704 ~ 17620079 (+) True LOC113539940
trnat-agu other downstream 1001000 17764461 ~ 17764534 (+) True trnat-agu
XR_003403977.2 other downstream 1236697 18000158 ~ 18010962 (+) False ctdnep1b
XR_004577948.1 other downstream 1349983 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 1433851 18197312 ~ 18208564 (+) True G66492