RNA id: TU77801


Basic Information

Item Value
RNA id TU77801
length 1308
RNA type TUCP
GC content 0.53
exon number 2
gene id bmp15
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16603809 ~ 16605717 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTCAATATGGCGgcagtaaatatatatttattcccACAGAAGCGAGCGCAGTTTGAAGCAGGTGCGTGTCTCAGGTGATTGACGTCGCGTCGCTGACGTCAGCAGGCACGGACACGCTGAGGATGTTAATTGAGAGGCTGCAGAAAGGTTTGTCAAACGGCAGTCAGGTGACTTTGTTTGACGATGGTAGCCTCGCCGGTTGTACTCCCCCGTGCCAGAAGTTAAAGATGAAGGCCGCCGGCAGTCATGGCTTCCTCAGACTTTGTGTACTGTcgtgtttctttttgttgttgccCGCGTTCACGTGCGCGGCCGATAAAATGGCCTTTTCCCCGTCACACCTCGGGGTGCTGGCGACAGAACAGAGTCGCCGAAAAAGCCACCCCAAACAGAGAAACCCCAACAGTAACGCGCTTTCGAAAAAACAAACGGAGGACCAAAGTCTGCAGTTCATGTGGAGTCTGTATAGGAAAGCGGCTAATGTAGACGGCAGGCCGAAACAGCGCAGATTGTTTGGGTCCAACACCGTCAGGTTGATTCGTGCTTCCGTCACCGGCAAGCGCTTCCATTCCTCATCAAATGACCTGCTGTATACTTACACTGTGCAATATGAACTGGAAAACCTCCCACTGAGCAAACTAAACAGGGCATCTTTCATTCACCTGAGGTCACCTGTGGCATCATACCCTCCGTTCATGTGTGAGGCCAGAGTCGCTTCCTCACAGCATGCTAACGACGCCGATGTTGTCATTCTGGGCCCTCAGAGCATGTGGACTGAATCGGATGTCACATCCCGTGTGTCTCTGTTTAAAGGCAGCCTGTTTGTCCTCTATGTTCAGTACAAGTGCTGGGAATCTGGCCCGGTTCATTCTGTTGCAAGACACAGGACACGCAAGAGACATTTCCCACCGCAAAACCACTTGAGAGCCCCTGCCTTGCTTCTCTTCTTGGAAGAAGAGGGACATCCTATGGAATGGGCAAAGTATGTCAAAGCCACTTCTCACACTGGCTCAAGGTTGCGCCGGTCCAAAGAACCCGGCAGCATCGGTTCTGACATTCCCAACTACAAGCGGTCCAAAAACAGTGTGGGCAAGAACCAGTGCAAGCTCCACTCATACCGTGTGACCTTCCGTGACCTCGGGTGGGATCACTGGATCATTGCGCCCCCTATGTACAACCCTCGCTACTGCATGGGCGACTGCCCACGCATCCTGCACTATGGCTACAACTCACCCAACCATGCCATCGTCCAGACTGTCATCAGTGAGCTCGGTGTTGCCGACATCCCTCTACCATCCTGTGTGCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77696 lncRNA downstream 9657 16592628 ~ 16594451 (-) False leap2
TU77566 lncRNA downstream 152216 16451677 ~ 16451892 (-) True G65508
TU77541 lncRNA downstream 172590 16431136 ~ 16431518 (-) True G65494
TU77540 lncRNA downstream 174750 16429143 ~ 16429358 (-) True G65493
TU77538 lncRNA downstream 176701 16427201 ~ 16427407 (-) True G65491
TU77804 lncRNA upstream 290 16606007 ~ 16606592 (-) True G65700
TU77819 lncRNA upstream 69543 16675260 ~ 16676349 (-) False G65715
TU77820 lncRNA upstream 69543 16675260 ~ 16684591 (-) True G65715
XR_004577996.1 lncRNA upstream 122974 16728691 ~ 16735897 (-) True LOC117597072
TU77823 lncRNA upstream 130436 16736153 ~ 16737913 (-) True G65718
XM_026936997.2 mRNA downstream 9603 16592562 ~ 16594505 (-) True leap2
XM_026936842.2 mRNA downstream 19575 16566064 ~ 16584533 (-) True phka1a
XM_026936843.2 mRNA downstream 19576 16566065 ~ 16584532 (-) False phka1a
XM_026936098.2 mRNA downstream 39971 16552388 ~ 16564137 (-) True LOC113539955
XM_034303424.1 mRNA downstream 40367 16552388 ~ 16563741 (-) False LOC113539955
XM_026936350.2 mRNA upstream 43468 16649185 ~ 16653787 (-) True otub1b
XM_026935979.2 mRNA upstream 50223 16655940 ~ 16661187 (-) True fam113
XM_026936431.2 mRNA upstream 57412 16663129 ~ 16669417 (-) True adad2
XM_034303757.1 mRNA upstream 57412 16663129 ~ 16669350 (-) False adad2
XM_026936429.2 mRNA upstream 109488 16715205 ~ 16726855 (-) False rcor2
TU77497 other downstream 180944 16419310 ~ 16423164 (-) True tnfsf12
XR_003404041.2 other downstream 532416 16055022 ~ 16071692 (-) False acox3
XR_004577994.1 other downstream 612223 15973579 ~ 15991885 (-) False smim20
XR_004578098.1 other downstream 699753 15879471 ~ 15904355 (-) False tbc1d19
trnap-ugg_2 other downstream 728210 15875827 ~ 15875898 (-) True trnap-ugg_2
TU78232 other upstream 794877 17400594 ~ 17402464 (-) True G66053
TU78241 other upstream 833776 17439493 ~ 17444174 (-) False rnaseka
TU78578 other upstream 988732 17594449 ~ 17634868 (-) True G66281
trnas-uga other upstream 1165433 17771150 ~ 17771231 (-) True trnas-uga
TU78662 other upstream 1186509 17792226 ~ 17830126 (-) False map11

Expression Profile