RNA id: TU78081


Basic Information

Item Value
RNA id TU78081
length 4932
lncRNA type sense_over
GC content 0.41
exon number 7
gene id arrb2b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17335497 ~ 17401388 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGCAAACCTGGCAGCTATAACCATAAGCAAGAACCATGCAGGTGTGTTGATTATGTGTTTTATACAGCAGCAGGACAGAATCATGGTGGGTGGTTTATTAGTAGGACGTGCTTCCCACGTTACACAAGACTATAATCAAAGCCAGACTGCTGATTAGACCTTATTAATGGCAAAGGTGAATTTCAAATCTGATGCAGGAGAAAGTCCTTTCAACATCATAGCAGACAGATGCAAGAGGGAAGTGAGATACAGATTTCATTCCCATGACAGAACGCGTCACCcataagcagtgtgtgttcCTTACCACCGTTTCCACCATGGGTGCTGGGCCTGTTGTCACCTCCTCCAAAGTCTTTGTCTGACAGGAACACAAGATGCCATGGAGTCCCCTCTAATTTCACTTTCACACTTCTTTCTCatacaagtcacttcactagcATTAGCATATTATCAGACTATTGTCTTCTTCATAAGTCACAAATGTAAAATGACTACAGAACAAATGCTGGCAACCAATAAACAAGCAAACTTTCCTTTGATCACCCCccccaattcccacccaccagtcagcTTTCCCCTATTGTACACTTGGATGAAAGAGCTATCTACCGTGTTCtgcatacataagctcacagatACCCCAATTACCCAGTattactgtgattgacaggggagatagagtatgccatccctcccacccataCAGCACGGCTAATAATTTTACTCCCTTAGCTCCCAGtgacggatggctgtggcatcgtccaGAGGTCACCAGTTTGAGcacaaatgcttttctgttgcacaaTTTGAGAACCTTATGTACCACTTTTAACATCTGAAAGCTTTAGTTGGACTTTtgatggctgttttttttttcaggcacaGTTTAGGTCCTGCCAAGGAACCAATTACTCATTCAGAGAGAATTCTTCTTCTGAAAAACTGCCCACTGTTTGGCTGATGTGATACCAGGTAGTTCAGTAGAATTAcagcataaaaataaagaaaataaagctcTTCTGACCAATTTATTCTGCTCTGCCACATTAGAGTCCTCTTCTTGACAAACTAAAACTGAGCTTTCAGGAAACTAGAAAAAAATCCTAAAGCATTGGTTTTAAAGCAGTGGTTTACAAAATAaggtgacaaaataaaaaaaacagcatgtggtTGTGGGCAGATTGTTCTTGCTGCCAGGCTGATCAGCACTAATGGCACTAATCCACGAGCATCACAATCACTGAACGTGTACTCTGACCACAGTTTCCAACCCTTGATACTGATGCCTGTCTAACTGAAGCTCCTGTATCTGTGCCCCAATAATAAGCCTCTTTCAAAATCACTTAGTTCTTAATTCCAGTTGTCATCTTGCCTGCTCAGCAGTTTATATATGCAACAGAGCATTGTAGGATGTTAACCGCTTAACTGTATCATACAGTATACTTGTGGAGAAGCATCTGTGCTTGTTATAGTTCCACGCttagttttcctttaatgtgtcactcatctgtattttgaaaaagtctgGCTAGCTGGTTCTAGCTTTCTCGAGCAGTGAAGTATAACGTGAAATGAAATGGATTTTCTGTTGTTTCATGGGAGTAAGCAGATTTTGGATATTTACAGCACTGCTAATTTTCTAACTGCACCATAAACACTGCACCAGTATATTCATCTTTAAGATGaattacacaaataaacactcaCCCTCTTGATTTTTCTTGTCATTTTCAGGAAGCAAAGCGTCAGCAAGGTTAAAGTCAGGTAGACCTAAGAGataagtgttatttattattgtgtgtgcatttttaggacatctgtgtaaatatataaatatgtaataacaatatatttctataacagtatCAAATAAGCCTGAAAAATATCACAGTGATACTAACACCTATTAATAAACCAATATGCATGATTATACCACTGTTGAATGCTCAGAATAGAATTTTTCAGAATagactgattaattttctataacagcacatctcattCTAAtccgttattgtttctatagtaacagctcattcatgggGACCTGTATGACGGATGCTCGCATAATTTAAGTCTaatgaaaaacagatttttaaaacgTGTTGCTCtggtgaagctttctgcaaggagacgtttatttaacaggAAAGCCACCAGGAAAGAAGACTTCTCGGTTatgtgacaagctgcaattgTTGTCTTATTTGCCTCAAGAAAGAGCAcaaatgagagacagaaaaagagaagctggtgagggaacgactttatagctgttataacgaaAATAAttacaagaactaacttgttattACTTGTAATTAGTAACTATAAAAGGACAAATGTATGacattagcaaattgctgtggtacaagaggaataaaacactgcactccctttcatgttttattcctttcttaataaataaacatacaagttacataaaatatgaaacaagGTGTACCACTTGATACAATGGTTGGGATAAAAGAGTGGATGTAGTGATGTGAGGCTGGCGTGCATGATTACAGTAAAGACAGAGAAGAGTGGAAATGATGGCTGAAGAGTGCACTTAAGCTTGCAGCCTGTAGATACTGAAACATGCATGCAGGTATCTGTCAGGTATTTCCCCTTCATGCCGAGCACTGAGTGCAGAAGCACTCAGCACGCTTAAGCACCCGTGTGACAGTGCGTGTTTCCGTGCTGtcatgtctttatttattttgccacatgtgtgttttttttttgatccatatcctgtctccacccctgtcttGTCACTGGTTGTCTCCCTTATGTGTCATGATCATTGTCACCTGTGTTCAGGTTGCCCTTGATTAGTTTATGTATTTAAACCCTCGTCTCTCTTTGTACGATGCGaagtattgttcagtgttttgcCTCCTGTTCATACCAAGCCTTGTTCAATGTTTTGACCTTGACTCCTGTTTTTTTTGACCTTTTTCTGTTCCCTAGTTCGCGTGTTTTGGATATCCATTGGCATAGCTGTTTGTAGATTGCCTGACCTTtgcatgtttaatatttacaagtTTTGACtcacgttttggatttgtctgcctgcctctctttAATAAACGCTTatactgcatttgcatcctTCTCAACTCGCAGTACATGACAGCAAAACACTGGTGATTGTACATGTAGTGAATTTATGGGCATGGGAGTAACACTGGAAAAAGGTCAATGGACACAAAACATAGAAAGAATGtttttctgacacttttctgAATCAAAACATTGATTCCCATCGAAAAGCTTTAAACTCAaagcattaaaggaaaaatggtGGCAGGTATATTACAGATAAGTGTCTTCCTTCATGTGCTTTGAATCTGCCTGTACaaatggacacacacagactcaggGACTATGAGTGGCTTCACCGAGGGACACggacaacacaatacacaccgGGCTTGTGAGGTGGGGCAGACGTGCGGAGGGGTCTGGAGGTTGTGCGGGGCAACAAAGCAGGCCGCACGGTTGGCCCAAAGAAATCAGCAAGGGTCTCCTCTGTCAGTAAAGGCTAGCAGGTTAGTAAGgttaaagacacacacaagaGTTGCTTTGTAGCTGAAGTGAGGATTAAAAAATGACTCAGCATTAGTGTTAGAAAGAGACCCACTGTGTATAAACAACATGAAAGGTACTTTGAACTGAGTGATTAAATGATGCACTGTTTTACACCAAGGCCCTTTAAAACAGTCAAGATTAATGGCTATGTCTATTATTATACAACAGGAAAATGTCTAGAATTTGCACTGGCTGTCTTTTTTACAGTGCATTCCTATAAGAATAATACTATCATAGTGTTTACACAATAGGGTCTTGGAGAGTACACCACCTTTGTATTCATGGCTACTGATTTGCACTCACCTGAAGGCAGCCCTGACATGAGTCAGACAGGGTGACATTGGTTTCAGCTTAAGACTAACTTGAAATTACTCAGCCTGTTCGTTAACCCATAAATCCACTTTTGATAATACCTTTTTGTGTCTGTCAGGTACTTAAGGGTCTCTGGGTCGTTTATGTGCAGGATAAGTGCTATAGCCCTGCTCGATATGGGACCACAAAAAATCAATGCATGCTGGCAGACAGAGCATGTTGTGATGCTGAGGAATAAGATCTGTGTCTATGTCAGAACTACACGCTGATTCCTAAAGAACTGCATGAATCAGTACAGGCCAAGCTTGAAAAGAAGCAGCTGGAAATAGGCAGTTAGAAAATGTcttgaaagaaaagagaaattgGGTTCATATTGATGACTCTCACCTTGTTTGGGTTTGGTCGTGGGCTTAACAGGGTCTTTGGGCTTAACAGGGTCTTTGGGCTTGACAGGGTCTTTGGGCTTGACAGGGTCTTTGGGCTTGACAGCAGGCTTTTCGGTAGGTTTATCAAAAAAAGTCTTCAAGAAGTCCAGCCCCAACTGCAAGCTTACAGTCTACTTGGGCAAAAGGGACTTTGTGGATCATCTAGATCATGTGGATCCAGTTGATGGAGTACTTTTGGTCGACCCAGAATACCTTAAAGACAGAAAAGTGTTTGTGACTCTGACGTGTGCATTTCGTTATGGCCGAGAGGATCTGGACGTGCTGGGATTGTCCTTCAGAAAGGACCTTTACATCTCCACCTTCCAGGCTTTTCCTCCACTGCCTGAGGAGCGCAAACCACTCAGCCGCCTGCAGGAGCGCCTGCTCAAAAAGCTCGGCCAGCACGCACACCCCTTCAACTTCACTaTTCCTCAGAATCTTCCCTgctcagtcactttacagccAGGACCAGAGGACACAGGCAAGGCATGCGGTGTAGACTTTGAGATCAGAGCTTTCTGTGCCAAATCTGTGGAGGAGAAGATTCACAAGAGGTGCAGCACTTTATCTTCATGCTCATGTACTTGCTGAGCGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77765 lncRNA upstream 564654 16770605 ~ 16770843 (+) True G65663
TU77754 lncRNA upstream 572036 16758260 ~ 16763461 (+) False LOC113539905
TU77755 lncRNA upstream 572036 16758260 ~ 16763461 (+) False LOC113539905
TU77756 lncRNA upstream 572036 16758260 ~ 16763461 (+) True LOC113539905
XR_003403984.2 lncRNA upstream 573486 16758227 ~ 16762011 (+) False LOC113539905
TU78075 lncRNA downstream 9761 17402559 ~ 17403879 (+) True G65927
TU78076 lncRNA downstream 9761 17402559 ~ 17403855 (+) False G65927
TU78089 lncRNA downstream 18196 17410994 ~ 17502645 (+) True G65933
TU78090 lncRNA downstream 38279 17431077 ~ 17440372 (+) True G65934
XR_004577991.1 lncRNA downstream 60648 17453446 ~ 17484922 (+) False LOC117597048
XM_034303556.1 mRNA upstream 5951 17308621 ~ 17329546 (+) True mtmr1a
XM_034303557.1 mRNA upstream 5951 17308621 ~ 17329546 (+) False mtmr1a
XM_034303558.1 mRNA upstream 5951 17308621 ~ 17329546 (+) False mtmr1a
XM_034303559.1 mRNA upstream 5951 17308621 ~ 17329546 (+) False mtmr1a
XM_026936026.2 mRNA upstream 5951 17308622 ~ 17329546 (+) False mtmr1a
XM_026936020.2 mRNA downstream 12555 17405353 ~ 17419302 (+) True pelp1
XM_034303561.1 mRNA downstream 33871 17426669 ~ 17500896 (+) False alox12
XM_034303560.1 mRNA downstream 33896 17426694 ~ 17438271 (+) False alox12
XM_026936030.2 mRNA downstream 94625 17487423 ~ 17500896 (+) True alox12
XM_034303569.1 mRNA downstream 115627 17508425 ~ 17520166 (+) False si:dkey-6n21.12
XR_003404112.1 other upstream 573622 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 573850 16761572 ~ 16761647 (+) True LOC113540744
XR_003404113.1 other upstream 574159 16761266 ~ 16761338 (+) True LOC113540743
XR_003404115.1 other upstream 574390 16760981 ~ 16761107 (+) True LOC113540745
XR_003404111.1 other upstream 574678 16760749 ~ 16760819 (+) True LOC113540741
TU78354 other downstream 216906 17609704 ~ 17620079 (+) True LOC113539940
trnat-agu other downstream 371663 17764461 ~ 17764534 (+) True trnat-agu
XR_003403977.2 other downstream 607360 18000158 ~ 18010962 (+) False ctdnep1b
XR_004577948.1 other downstream 720646 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 804514 18197312 ~ 18208564 (+) True G66492

Expression Profile