RNA id: TU78089


Basic Information

Item Value
RNA id TU78089
length 1571
lncRNA type read_through
GC content 0.37
exon number 2
gene id G65933
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17410994 ~ 17502645 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cttgttgatgagagagatgagaggagaatgaccagactggtcaccgaaactggacagttgaagtctggaaaaagaacagctgatcttttttctaatcttcaactgtccagtttctgtgagtcagtgcccatgatagcctcagattcctgttcttggctgacaggagtggaactcagtgtggtcttctgcgggtgtaacccatccacctcaatgttgaatgttttgtgcatgctgagatgcttttctactcaccccgggcgtaaagagtgattatttgagttactatatccttcctggcagtctggtcattctcctctgatctctctgatcaacaaggcgtttccactcacagaactgtcgctcactcagtgttttttgtttttcgcaaccattctgtgtaaactctagagactgctgtctctgaaattcccaggagttcagcagtttctgaaatactcaaaccagcccatctggcaccaacaaccattaaagtcacagagatcacactttttccccattctgatgtttgatgtgaacattaactgaagctcttatggaaaatgatttaatttcataCCTTTATTAATAGGTTAATCATTTATCTATTATCTATTTCTTAATTATCCTCAGTTAATCCTTCATTATAATCCATAGTCACAAAATTTAGGTGGGTAATCCGAAATCTAGTGTATCTGCTTCTTATCATTTAGACTTCTTGTGTGAGAAAGCAGGAAGATGTCCttgaaacatttattaaaaggCATAGAGGGAGGCCTACTCTAACAGGACTGATTTAAGATACCTGCAGGATGAGAAGCTACGGTCATGTCATGTCTTTTTATGTGTCATGAATAAGATAGGCTTGTGACCTGAGGCTTAGATGAAGTAGTTCTCACAAGTAGTTCTCACAGTCCTagtatttttagattttctcCATCTGTGTATTTCCTTTCCTGTTAATCATGTAATCATTTATGATCATTCATGTTaagtttaactttatttgaccAATAAGCATGAAGTTCTTAAGTTCTTCTGAAGTTTCCTGTAACCAATCATGAAACACTAGCCCTGTGCAGTGAACTATATAATTGAACACTTTGGTCGCTGGAGTTCTTCTCCCTGGCCGTGACAAGAATAAACATATTACTCTGGAGTCaactgtgtctctgtgagtTTGACTTCTATTTGTCTTCAGAAGGTCATATATTCTACGacactcttgacctgtatctgcatgattttatgcattgcgctgctgccacaagattggctgattagataactgcatgaatgtgcaggtgtacctaataaagtggatggtcaGTGTATACGCTTCAGATATGTTCTTCTTATGTTGTACAGATTATACTTTCAAAATCAATAAACTGGATATAAATAAAACTCCGTAATGCATGTAACTTCCAAGAAAAGATAGCCAGAGATATTAGGAACTACAAAGATGTTTAttcctgtaaataaataagtgttacAAATAAGATACTagatttttaacagtttatacaaaaataatattcacaCAAACAATTGTCGTTTCTactttgtattta

Function

GO:

id name namespace
GO:0009799 specification of symmetry biological_process
GO:0021532 neural tube patterning biological_process
GO:0009855 determination of bilateral symmetry biological_process
GO:0009888 tissue development biological_process
GO:0021903 rostrocaudal neural tube patterning biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0007389 pattern specification process biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78075 lncRNA upstream 7115 17402559 ~ 17403879 (+) True G65927
TU78076 lncRNA upstream 7139 17402559 ~ 17403855 (+) False G65927
TU78081 lncRNA upstream 18196 17335497 ~ 17392798 (+) True arrb2b
TU78094 lncRNA upstream 38855 17357338 ~ 17372139 (+) True G65938
TU78095 lncRNA upstream 51425 17358486 ~ 17359569 (+) True G65939
TU78323 lncRNA downstream 74459 17577104 ~ 17578946 (+) True G66124
TU78331 lncRNA downstream 90987 17593632 ~ 17634867 (+) False G66128
TU78335 lncRNA downstream 90987 17593632 ~ 17634867 (+) False G66128
TU78342 lncRNA downstream 90987 17593632 ~ 17634867 (+) False G66128
TU78336 lncRNA downstream 91109 17593754 ~ 17634867 (+) False G66128
XM_026936053.2 mRNA upstream 9606 17351919 ~ 17401388 (+) False arrb2b
XM_026936024.2 mRNA upstream 81448 17308622 ~ 17329546 (+) False mtmr1a
XM_034303569.1 mRNA downstream 5780 17508425 ~ 17520166 (+) False si:dkey-6n21.12
XM_026936070.2 mRNA downstream 10867 17513512 ~ 17520166 (+) True si:dkey-6n21.12
XM_026936048.2 mRNA downstream 17631 17520276 ~ 17523339 (+) True si:dkey-6n21.13
XM_034303563.1 mRNA downstream 70945 17573590 ~ 17586296 (+) True LOC113539911
XM_034303564.1 mRNA downstream 101662 17604307 ~ 17609478 (+) True LOC113539941
XR_003404112.1 other upstream 649119 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 649347 16761572 ~ 16761647 (+) True LOC113540744
XR_003404113.1 other upstream 649656 16761266 ~ 16761338 (+) True LOC113540743
XR_003404115.1 other upstream 649887 16760981 ~ 16761107 (+) True LOC113540745
XR_003404111.1 other upstream 650175 16760749 ~ 16760819 (+) True LOC113540741
TU78354 other downstream 107059 17609704 ~ 17620079 (+) True LOC113539940
trnat-agu other downstream 261816 17764461 ~ 17764534 (+) True trnat-agu
XR_003403977.2 other downstream 497513 18000158 ~ 18010962 (+) False ctdnep1b
XR_004577948.1 other downstream 610799 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 694667 18197312 ~ 18208564 (+) True G66492

Expression Profile