RNA id: TU78151


Basic Information

Item Value
RNA id TU78151
length 391
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G65984
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17254830 ~ 17309084 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aggaagcCATATTCACCTGTCCACCGAGTCGCTGCTGTCTTGTCGAGGCGCGATGTTTACTCCCAGAGCCCGCGGCTTCCTCGGAACCGGCGGTATCGCGGGATTCTCGGAGCCAGAACACGCCTGTTTCTCCATGTTTTCCGCTTCCTGTCTCCTGAATGTTTGTCGCTATCGCTTTATCTCTCTGTGCAGAAGGGGAGGCAGTCggctatcagtgtgtgtgtgtgtgtgtgtgtgtgtgctcttctTCCCCTCCCTTATGAAGGAAACGCCGTCATCGCTTCCTGGAGTGCTTTTGCTATTATGCTGCTGACAAAAAGCGCTTCCGTTTACTTATGGCGAGgaaatcatctctctctctgcctctctctctcacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77958 lncRNA downstream 159629 17080164 ~ 17095201 (-) True LOC117597208
XR_004578115.1 lncRNA downstream 159674 17080215 ~ 17095156 (-) False LOC117597208
TU77937 lncRNA downstream 317410 16937213 ~ 16937420 (-) True G65809
TU77827 lncRNA downstream 450576 16803195 ~ 16804254 (-) True G65722
TU77823 lncRNA downstream 516917 16736153 ~ 16737913 (-) True G65718
TU78204 lncRNA upstream 1303 17310387 ~ 17311060 (-) True G66028
TU78235 lncRNA upstream 93538 17402622 ~ 17403815 (-) True G66056
XR_003403988.2 lncRNA upstream 137677 17446761 ~ 17453705 (-) True LOC113539942
TU78544 lncRNA upstream 262247 17571331 ~ 17637986 (-) True G66274
TU78553 lncRNA upstream 265691 17574775 ~ 17575306 (-) False G66274
XM_026937047.2 mRNA downstream 75189 17102529 ~ 17179641 (-) False dysf
XM_026937045.2 mRNA downstream 75189 17102529 ~ 17179641 (-) False dysf
XM_026937042.2 mRNA downstream 75189 17102529 ~ 17179641 (-) False dysf
XM_026937035.2 mRNA downstream 75189 17102529 ~ 17179641 (-) False dysf
XM_026937048.2 mRNA downstream 75190 17102529 ~ 17179640 (-) False dysf
XM_026936062.2 mRNA upstream 20463 17329547 ~ 17343282 (-) True cd99l2
XM_026936063.2 mRNA upstream 20463 17329547 ~ 17343279 (-) False cd99l2
XM_026936064.2 mRNA upstream 20463 17329547 ~ 17343278 (-) False cd99l2
XM_026936066.2 mRNA upstream 20463 17329547 ~ 17343276 (-) False cd99l2
XM_026936065.2 mRNA upstream 20463 17329547 ~ 17343274 (-) False cd99l2
TU77801 other downstream 649113 16604108 ~ 16605717 (-) False bmp15
TU77497 other downstream 831666 16419310 ~ 16423164 (-) True tnfsf12
XR_003404041.2 other downstream 1183138 16055022 ~ 16071692 (-) False acox3
XR_004577994.1 other downstream 1262945 15973579 ~ 15991885 (-) False smim20
XR_004578098.1 other downstream 1350475 15879471 ~ 15904355 (-) False tbc1d19
TU78232 other upstream 91510 17400594 ~ 17402464 (-) True G66053
TU78241 other upstream 130409 17439493 ~ 17444174 (-) False rnaseka
TU78578 other upstream 285365 17594449 ~ 17634868 (-) True G66281
trnas-uga other upstream 462066 17771150 ~ 17771231 (-) True trnas-uga
TU78662 other upstream 483142 17792226 ~ 17830126 (-) False map11

Expression Profile