RNA id: TU78232


Basic Information

Item Value
RNA id TU78232
length 1849
RNA type TUCP
GC content 0.37
exon number 2
gene id G66053
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17400594 ~ 17402464 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGAATTTCAGATTAGTTCAATAATGACATTaactttacataaaaaaacaagttttgaaatgaaaaaagcaattttataattttcattAAGTGAACATAATAACAGAATGATAAGTGGTAAACTCAGTAGTTTCTAAGTTCCTCAAACAAGAAAAGGTTTGATGGGCAAGCTTTAAAACAAAGCATTTGTGGAGTTAATACGATTCATTAGCAGTGGTCACTTCttcagtgaaaatattttttttcaactaaAGAGAGTGTAACATGGACAATAATAATGTAGGTTATATATAAAAGGTCAATCAATAATAGGTGACGGTTAATAGTAGATCATAGATGAGTACAAATGGTTGCTCAGTAATAGAGGGGAGTTGGAGAATGATGCTTACTGCTTACAAAATCAAAACCATCAAAAGCAGAGCATTTCTTTTTGACACAAGGTGGAGCAGAAGAGCCGGGATGTGATTTCACCAGTGTAACAGCTCATCTTCACAGACACTGACTCccaacataaattaaaaaaaaaagtgcttttaatCAGTAGGTTAATTGTAAAAcctttgttaaaaatgttaaaaaaaaaaaatagagtctAAATCTGGCACTCTTAACTGGGTTATGTTTCTAAAGAGAGATTGGCACTAAACAAATGTAGAAAAAGGGAAAGCGGCTGAAATGGTGATGTCTGATAAGACGAGTTGCCTATTTCTTGGAAATTATAACAAATAACACCTGAAAATAGGTCTCAGTTATTTATCAATTTCAACTAGGTGTTCAATTTTGGCAATTTAAAACTAGAAAAGCTTCACCACACAGCAGTTCCAGATGATGGGTTAACTGTGCTGCATGTAATAGCAATAGGCCTCTGCAGGCAGAGATTTCACTGTCTCTGTTTATTCAAAACActcagtccacacacacacacacacacacacacacacacacacacaggtggcaTAACCAATGGCTATAATAAATCGAGTCTTCTGTGGTCCAACACAAATGTGCTGACTATTGAGTGCTCTCTTAAGCACACTGAACAGTCATTCCTTACATATGTTCATGCGATATGTATACATTTTACatagctataaaataaaatgctagaACATTGAAAGAAAAAGTCTCTTGGTGGTCTATACTGAATctgataaagaaataaaattctcAAGCTCATGTTCCCTATCTGTCATACTCTACACTGAAGTAATGTTTTACCTatgttattacaatattacaaagCTAGTAATGCCCACTCAGTTTACAGTGGGGAAGGGGGTGGGGAGGAAATATAAACTAGATAAAAAGATACCCCTGAATTAATGGACCCTCTGTTCAATGATGTTTCGTAGACATTCCTGACCAGTTCTGTTTAACCTCACCGCTTTCTTTGCCTTTCTCACTGGgtttcattttctctgtctAATGCACATACACAAGAACAAAgtagcttccaaaaaaaaaaaaaaaaaaaaaaaaaaaaggtctaaagACAACAGCATCACTGATGCAAAGGGACAGGGAGAGgggcaagagaaagaaaaagaaaaagaaaaaaaagagaggagagaaggcGCTCAGGTGAGCGTCCTGCTCTTTCAGGTTGGCCCAGTGGAATGGTGGTGTAGTAGTACTGACACTCAGAGCCCCTTCAATCCAGCTCCCTCTCTCCACACAGGGTTAGCAGAAGTGGTCATCCTCATCTTTATCATCCTTCATTCCCTTCAGCCTCAGCCGCGCAAAGTCCTCAAACACAAAGTCATCATCCTGAGAGAAGTTACTGCGGAGGCACAAGAGAAGTCAGTAATACCAAGGACAGACTTAGTTGTTGCCTCTCgtacacacttgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78204 lncRNA downstream 89534 17310387 ~ 17311060 (-) True G66028
TU78151 lncRNA downstream 91510 17254830 ~ 17309084 (-) True G65984
TU77958 lncRNA downstream 305393 17080164 ~ 17095201 (-) True LOC117597208
XR_004578115.1 lncRNA downstream 305438 17080215 ~ 17095156 (-) False LOC117597208
TU77937 lncRNA downstream 463174 16937213 ~ 16937420 (-) True G65809
TU78235 lncRNA upstream 158 17402622 ~ 17403815 (-) True G66056
XR_003403988.2 lncRNA upstream 44297 17446761 ~ 17453705 (-) True LOC113539942
TU78544 lncRNA upstream 168867 17571331 ~ 17637986 (-) True G66274
TU78553 lncRNA upstream 172311 17574775 ~ 17575306 (-) False G66274
TU78558 lncRNA upstream 172479 17574943 ~ 17637986 (-) False G66274
XM_026936062.2 mRNA downstream 57312 17329547 ~ 17343282 (-) True cd99l2
XM_026936063.2 mRNA downstream 57315 17329547 ~ 17343279 (-) False cd99l2
XM_026936064.2 mRNA downstream 57316 17329547 ~ 17343278 (-) False cd99l2
XM_026936066.2 mRNA downstream 57318 17329547 ~ 17343276 (-) False cd99l2
XM_026936065.2 mRNA downstream 57320 17329547 ~ 17343274 (-) False cd99l2
XM_026936080.2 mRNA upstream 37013 17439477 ~ 17444188 (-) True rnaseka
XM_026936075.2 mRNA upstream 130701 17533165 ~ 17536773 (-) False zgc:92664
XM_026936073.2 mRNA upstream 130701 17533165 ~ 17536773 (-) True zgc:92664
XM_026936076.2 mRNA upstream 130701 17533165 ~ 17536770 (-) False zgc:92664
XM_026936033.2 mRNA upstream 138126 17540590 ~ 17553140 (-) False ache
TU77801 other downstream 794877 16604108 ~ 16605717 (-) False bmp15
TU77497 other downstream 977430 16419310 ~ 16423164 (-) True tnfsf12
XR_003404041.2 other downstream 1328902 16055022 ~ 16071692 (-) False acox3
XR_004577994.1 other downstream 1408709 15973579 ~ 15991885 (-) False smim20
XR_004578098.1 other downstream 1496239 15879471 ~ 15904355 (-) False tbc1d19
TU78241 other upstream 37029 17439493 ~ 17444174 (-) False rnaseka
TU78578 other upstream 191985 17594449 ~ 17634868 (-) True G66281
trnas-uga other upstream 368686 17771150 ~ 17771231 (-) True trnas-uga
TU78662 other upstream 389762 17792226 ~ 17830126 (-) False map11
XR_003404075.1 other upstream 513166 17915630 ~ 17915771 (-) True LOC113540701

Expression Profile