RNA id: TU78241


Basic Information

Item Value
RNA id TU78241
length 923
RNA type TUCP
GC content 0.37
exon number 3
gene id rnaseka
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17439477 ~ 17444188 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTAAGTCAGCTGACTCGTGCAGATGACTATTGACAGTCTCAGACGTAGGAAGAAGTTTGGGAAAACAAAGTTTTAACTTTATAATGATATAAGGTAACTTTTGGTCGCACTGTACTGAGAGTAATTTTGAAAATGCCTTCTTTTATCATCTGTGGTCCGAAAATGGCAGTATGTATGCTGGTGCTGAGCATGTGGGGAGTCATTATGCTGGCAATGCTGGGGATTTTCTTCAGCGTTCATTCGGCTGTACTGATTGAGGATGTGCCTTTAAAGGAGGAAGACCGTCAAGACACTCAGAACCCACTGCAGAATGTTTATGCTGTCTACAACCAAGTTGGCTACAACTGCTTCATCGCAGCAGGAATCTATGTAGTGATTGGATTTGTGTCTTTCATTCAGGTCCGACTGAATAAGCGCAACGAATATCTTGTGCGTTAGCATGATCTGGTGGGCGGAGAAATCAGACTCTGTGAAACTGATCTTCATATCTTGCTGAATTTCCTTGATCACCAATGTTTTGATATTACAGAAGGAAACTGCTGTTGGTATTTTAGTTGTAATCAGAgccaaaatgttgcattttcATTGTGCCTTTTCTCTTTGTAAAACATTCTCAGGTTTAgatctttaacaaaaaaagccTCAGTGTGGGATTGATATTTATGGAAGAAGGATTGTTATGGTTAACATTGTGCCTTACTGCCTTCTACACATTTTGTCATGATGTTTACTGTAGCCCAAAAGCTTTTaaatttttaagaataaaaaatgtgcTACTGTTTGGTTGAAAAAATGTGCTACTGTTTGGTTGAATTAAAAATCGCATACAATAGTATcacatttgaataatatttatatatacgtAAACACAACAGAAAGTAGAAACGACCATTGTCTGTGtgaatttaatttcatgtaTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78235 lncRNA downstream 35678 17402622 ~ 17403815 (-) True G66056
TU78204 lncRNA downstream 128433 17310387 ~ 17311060 (-) True G66028
TU78151 lncRNA downstream 130409 17254830 ~ 17309084 (-) True G65984
TU77958 lncRNA downstream 344292 17080164 ~ 17095201 (-) True LOC117597208
XR_004578115.1 lncRNA downstream 344337 17080215 ~ 17095156 (-) False LOC117597208
XR_003403988.2 lncRNA upstream 2587 17446761 ~ 17453705 (-) True LOC113539942
TU78544 lncRNA upstream 127157 17571331 ~ 17637986 (-) True G66274
TU78553 lncRNA upstream 130601 17574775 ~ 17575306 (-) False G66274
TU78558 lncRNA upstream 130769 17574943 ~ 17637986 (-) False G66274
XR_004577990.1 lncRNA upstream 147665 17591839 ~ 17592470 (-) True LOC117597047
XM_026936062.2 mRNA downstream 96211 17329547 ~ 17343282 (-) True cd99l2
XM_026936063.2 mRNA downstream 96214 17329547 ~ 17343279 (-) False cd99l2
XM_026936064.2 mRNA downstream 96215 17329547 ~ 17343278 (-) False cd99l2
XM_026936066.2 mRNA downstream 96217 17329547 ~ 17343276 (-) False cd99l2
XM_026936065.2 mRNA downstream 96219 17329547 ~ 17343274 (-) False cd99l2
XM_026936075.2 mRNA upstream 88991 17533165 ~ 17536773 (-) False zgc:92664
XM_026936073.2 mRNA upstream 88991 17533165 ~ 17536773 (-) True zgc:92664
XM_026936076.2 mRNA upstream 88991 17533165 ~ 17536770 (-) False zgc:92664
XM_026936033.2 mRNA upstream 96416 17540590 ~ 17553140 (-) False ache
XM_026936034.2 mRNA upstream 96416 17540590 ~ 17553140 (-) True ache
TU78232 other downstream 37029 17400594 ~ 17402464 (-) True G66053
TU77801 other downstream 833776 16604108 ~ 16605717 (-) False bmp15
TU77497 other downstream 1016329 16419310 ~ 16423164 (-) True tnfsf12
XR_003404041.2 other downstream 1367801 16055022 ~ 16071692 (-) False acox3
XR_004577994.1 other downstream 1447608 15973579 ~ 15991885 (-) False smim20
TU78578 other upstream 150275 17594449 ~ 17634868 (-) True G66281
trnas-uga other upstream 326976 17771150 ~ 17771231 (-) True trnas-uga
TU78662 other upstream 348052 17792226 ~ 17830126 (-) False map11
XR_003404075.1 other upstream 471456 17915630 ~ 17915771 (-) True LOC113540701
XR_003404117.1 other upstream 1572649 19016823 ~ 19016953 (-) True LOC113540749

Expression Profile