RNA id: TU78342


Basic Information

Item Value
RNA id TU78342
length 1944
lncRNA type read_through
GC content 0.46
exon number 5
gene id G66128
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17593632 ~ 17634867 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagagttgtctgtggttgtttctgaactctcagctgttgtggcaGAGTCACTAGTGGTTGTATTagagttgtctgtggttgtttctaaACTCTCAGCTGTTGTggcagaatcactagtggttgtaagagagttgtctgtggttgtttccgaactctcagctgttgtgccagtatcactagtggttgtaagagagttgtctgtggttgtttccgaactctcagctgttgtgccagaatcactagtggttgtaagagagttgtatGTCGTTGTTTCcaaactctcagctgttgtgccagaatcactagtggatgtaagagagttgtctgtggttgtttctgaactcACAGCTGTTGTGGCAGAGTCAGTAGTTGTTACGGTTGCATCTGGGgtagttgtaagagagttgtctgtggttgtttccgaactctcagctgtagtgccagaatcactagtggttgtaagagagttgtctgtggttgtgtctgaactctcagctgtagtgccagaatcactagtggttgtaacagagttgtctgtggttgtgtctgaactctcagctgttgtgccagaatcactagtggttgtaagagagttgtctgtggttgtttccaaactatcagctgttgtgccagaatcactagtggtcgtaagagagttgtctgtcgTGGTTTCTGAACTCACAGCTGTTGTGctagaatcactagtggttgtaccaaagttgtctgtggttgtgtgtgaactctcagctgttgaaccagaatcactagtggttgtaggagagttgtctgtggttgtgtctgaactctcagctgtagTGCCAAAATCACTAGTGGTCGTAacagAGTTGTCTGTGGTTGattctgaactctcagctgttgtgccagaatcactagtggttgtgtctgaactctcagctgttgtgcgaGAATCACTGGTGGTCGTAaaagagttgtctgtggttgtttctgaactctcagctgttgtgccagaatcactagtggtcgtaagagagttgtctgtggttgtttctgaactcACAGCTGTTGTGGCAGAGTCAGTAGTTGTTACGGTTGCATCTGGGgtagttgtaagagagttgtctgtggttgtttccaaactatcagctgttgtgccagaatgaCTAGTGGTCGtgagagagttgtctgtggtggTTTCTGAACTCACAGCTGTTGTGGCAGAGTCAGTAGTTGTTGCGGTTGCATCTGGGgtagttgtaagagagttgtctgtggttgtttccaaaccctcagctgttgtgccagaatcactagtggttgtaagagagttgtctgtggtggTTTCTGAACTCACAGCTGTTGTGGCAGAGTCAGTAGATGTTACGGTTGCATCTGGGgtagttgtaagagagttgtctgtggttgtttccgaacCCTCAGCTGTTGtcccagaatcactagtggttgtaagagagttgtctgtggttgtttccgaactctcagctgttgtgccagaatcactagtggtcgtgagagagttgtctgtggttgtgtctAAACTCTCAGCTGTAGTGCGAGAATCACTAGTTgatgtaagagagttgtctgtggttgtttccgaactctcagctgttgtgccagaatcactagttgTTGCAGTTGCATCTGATgtagttgtaagagagttgtctgtggttgtttccgaactctcagctgttgtgccagaaacACTAGGTGTTACGGATGCATCTGGGgtagttgtaagagagttgtctgtggttggtTCCGAGctctcagctgttgtggcagagtcactagtggttgtaagagagttgtctgtggttgtttccgaactctcagctgttgtgccagaatcactagtggtcgTAAGAGAGttttctgtggttgtttctgaactctcagctgttgtggcagaatcactagtggttgtaagagagtNNNNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78323 lncRNA upstream 14686 17577104 ~ 17578946 (+) True G66124
TU78089 lncRNA upstream 90987 17410994 ~ 17502645 (+) True G65933
TU78365 lncRNA downstream 14498 17649365 ~ 17651710 (+) True G66144
TU78379 lncRNA downstream 68367 17703234 ~ 17703455 (+) True G66151
TU78387 lncRNA downstream 105208 17740075 ~ 17747165 (+) True G66159
TU78431 lncRNA downstream 137686 17772553 ~ 17775309 (+) True G66179
TU78468 lncRNA downstream 238532 17873399 ~ 17877074 (+) True G66214
XM_034303563.1 mRNA upstream 7336 17573590 ~ 17586296 (+) True LOC113539911
XM_026936048.2 mRNA upstream 70293 17520276 ~ 17523339 (+) True si:dkey-6n21.13
XM_034303569.1 mRNA upstream 73466 17508425 ~ 17520166 (+) False si:dkey-6n21.12
XM_026936070.2 mRNA upstream 73466 17513512 ~ 17520166 (+) True si:dkey-6n21.12
XM_026936030.2 mRNA upstream 92736 17487423 ~ 17500896 (+) True alox12
XM_034303567.1 mRNA downstream 2681 17637548 ~ 17642740 (+) True LOC113539967
XM_026936060.2 mRNA downstream 20453 17655320 ~ 17664976 (+) True nat16
XM_026936069.2 mRNA downstream 38681 17673548 ~ 17681486 (+) False si:ch211-196f2.6
XM_026936067.2 mRNA downstream 38683 17673550 ~ 17681486 (+) True si:ch211-196f2.6
XM_026936056.2 mRNA downstream 59781 17694648 ~ 17698271 (+) True LOC113539928
XR_003404112.1 other upstream 831757 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 831985 16761572 ~ 16761647 (+) True LOC113540744
XR_003404113.1 other upstream 832294 16761266 ~ 16761338 (+) True LOC113540743
XR_003404115.1 other upstream 832525 16760981 ~ 16761107 (+) True LOC113540745
XR_003404111.1 other upstream 832813 16760749 ~ 16760819 (+) True LOC113540741
trnat-agu other downstream 129594 17764461 ~ 17764534 (+) True trnat-agu
XR_003403977.2 other downstream 365291 18000158 ~ 18010962 (+) False ctdnep1b
XR_004577948.1 other downstream 478577 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 562445 18197312 ~ 18208564 (+) True G66492
TU79253 other downstream 1221589 18856456 ~ 18858652 (+) True G66864

Expression Profile