RNA id: TU78403


Basic Information

Item Value
RNA id TU78403
length 7231
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G66169
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17904611 ~ 17919097 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAACACTCTTTTATAGAGCCAGGCGATGTGCTGGACTGAGGTGCCTGGCTTAGTACACTGTCCATTTAACCTTTTCTCACCACAACCTTTAAATTCTTGCCTGCCCCCCGGTGGACAGTGCTCTAACAAGGTTTAGTGGAACTTGACAAAAGTGGATGTTCATGACTAACATTTGTTCACGTATTTTGAACATAGGCTAGAAATGTACAGCCTAAAATGATACAAAAATTAACTTAGTTAGATTTCACAGTAGGTCATGTAAATGACAATAGCAAAAGTCTCTGAAGCTCCTTGGGGGTTGGTGGAATAGTATCCCAGTCTCTCTGATTAATTAGTGTTCCACAGTTCATACAGAAATACTTCTCAATACAAATTATATCTGGTGTGGTGGAGTCTGGACAGGGCCACAGCGCAGCAAAGTTTAGCATTTCATCTTATATGACTCGTTACCTCAAAACCCTGAGTTTGACACTCCTTCAATATTTTATCTTGTCTACAATCTAAACGACAGCATTCACTTCTATAATTAGACTAAACACGATGCACAACTAAAGTAAAACAGCATTCCTCCTGCGTGACCTCTCGCCAGTGTGCTCTTAGGACACACCAGCTAAATTCATCTTTGCAACTTTGGCTCtgatggtcacatgaccagtcaGCATGGACAGTAAAGTCTATCCAAGGGTCTATATGAacagtatttacattttaactaataaaatacaaaatattgcaCCACTACATACTATTTCCTCAATATTTTtcagttataccacagcaaagatgttttttttgcttagaCCTGCATGGTTGAGTTTTTGAACTACTTAAAGTGGACTGTTTGTATAGTACTTAACTTTACTAGGCTTATAGACCATGCCCTGGCATGGTGCCTCAAAGGACTCCCCAGAAAACATGTTTGACTTGTTAAAAAGAAATACCtttatttaagaaaattaaaataaatactatacAGAATCCAATGTAGAAAAAGTTTAATACACGGCTTCTGTCTGAAAAAGGTtatcacattttaataaattcatttaaaaaaacagcactgagcAATGTAAACTGCACAGCCAACCCTCCATTCCCACTCCACAAGACAGGCTTTTTAAaccagaggagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtaacgtTAGAATCTCTACATAATCATTTGTAGTTTGGTCCTTTAAAGACCCCTCCAATCTCTTTTGGTGAGGTAGGTTACTGGAGCAACACTCCTCAATACAGGACTTACACAGATTCTATACAATACACTATGTGGTGATAATGTCCCAACACCTAGCCATGTGTGGCATGGGTGAAATGAGAAATGTCTATTTAGAAGAAAATGCTACTGTAAAATGGCACTATACAAGATTAAGATGTAAAAATCATGTCCGGTAATACAACGCTTATTGATTCAGCAATTTCTAACAGAAGTGATGGCAGTGTTTCTGTTcaagcactgcaaaaaaaaaaagcacaaaggcTCACACTCCACCCTGAAAGCACAGAAGAGTTAATACTTTGAATGCAAGACAGATCTATACCCAAATACCTGGCTGAGCAAGATGAGAGTTTCACACTCATCACCTTATATTTTCTGCCATACTTTTCCATAAACTATTAGAGCAGCCACAATTTATGGCAAAATGGAAAGTCAAATAAACAGGTCCACTTCAACCATTTGGTGCTCAGCTCTTTAGTCAATAGATACAAAtatacagaacaataaaataggTGGATGGAACATGTCATAGGGATAACGTCACTGCACAAGGCTCACTCCAAATGAATCAATCATCTTTAAATGCTAAAAAGAACACTCAAGAAAGTCTTTTCAAAGACACCCATGATGCAGATTTTATAATGTCTTGCTGTGAACAGTGATAATCATTGGGGCAGAGTGGTGGATTTAGAGGGGAAAGGAGCATATACAAGTCCAGACAAACAGGAGACAAAGAAATGAAGTGGGGGAAGAAAGGAGTGGAAAGATGTTTTCAGATCAAGTCAGCCACATTCATGGGCATCTCCTCCACGGTGGTGTTGTAGAAGGTCTCAATGTCCCGGAGCGTGCGCTTGTCATCCTCAGTCACCATGTTGATAGCAACACCCTTTCTACCAAAACGGCCACCGCGCCCGATCCTAAACAGAGTAATCATAGTTAGAATTCCTAAAAACTATTCTTTACCtcataatataaaaacaaagtaaacatCTGGAGGAGAGCTGTGGTCAGTACTTGCCTGTGGATGTAATTCTCCCTGTTTGTGGGCAAATCATAGTTGATAACCAGGGAAACCTGCTGCACATCAATGCCTCGAGCCTGGTGGACAGAAAACAGTGTGTATTAAAGTGTACATGGAGGCCAACTAAATTTATTCAACTACACAAAGCATTATGGGTTTGCTACAATATTATATCCCTGACACTGTtcctaaataaacattaattaagaGACAAACCTACCAGCAGGTCAGTGGTGATGAGGACACGACTGGAGCCAGAGCGGAACTCCTTCATGATTAAATCTCTCTCCTTCTGGTCCATGTCTCCATGCTAGAAAACCAATACAATGGTCAGCTCATGGTTAGCAAACTCACAATTTCACCTTCAGTCTGAAGTGAAAGTGTGCCCATAGCATGAAACAGTCTTATGCTCACGGTACTGAGTAGACTGGGATGAATATGGACTGCATTTTTTCTTCCCTTAGCAGATATAGAACCAAGTGCCACAGACAGACACTGCCTTGCCCAGTTGTTAAGGGTGGACATGTCACCTCACCCCAGTTCTCAGATAATTCACTTACCAAAGCAGAGACTGTAAAGTCTCTGGCATGCATCTTCTCAGTCAGCCAATCCACCTTCCGGCGAGTGTTAATGAAGATAACAGCTTGAGTGATGGTCAGTGTCTCATACAGATCACACAGAGTGTCCAGCTTCCACTCTCCCTCTCCACGTTAATGTAGAACTGACGAATACCCTCCAGGGTCAGCTCCTCTTTCTTGACCAGGATCCTTACAGGGTCTCGCATGAACTTGGTGGTGACATCCAGCACCTCCTGGGGCATGGTGGCCGACAACAGAATCACCTGTAGGAAGACAAACATGTATTAGCATAAAGTTtacaatgccttttttttttttataaatcactAAATGCAGCAAATGCATTTGCAAAATGAAATGTCAACTGCTTTATAGTCGTGAAGAGGTACAGGGAGACCCAGTCACTGTGGAGAGCAGCAGGAATACTCTACCAAAGAACTTTGTTCCCTCCACAGCAAAGATGGCTGGGGGGAGAGGGATCTCTGGCCAACGCATACTCTCATACAAAACAACCATCGTAGAAAACAGATCATTTATTAAGTTATATACGGAATGTCAGTACATGACATTTTTACCTGAATGTCAGTTGACAGCTTCTGGAAAATCTCGTAGATTTGGTCCTTGAATCCTCGGCTCAACATCTCATCAGCTTCATCCAATGCAAACATCTTGATGTATTTGGGAGCTGATGAAGGTAAAGATCTATGGTCAGTGTTTTACAGGGCAAGCCATCAACACCACACCATGGCAAAATACCTTGAAGCTACATTTCAGCACAACTTCAAACTGAACATAAACCTAGTTTAACGcattacacacaacacatttattCCTGAATTTGCTAACCAACAAAACATTGTGGCACACTACTGGAGTCTTCACAAATCATCCAACACTAAAAGAGGGGCAATGCTGTGATCAGGTCAGTGAGGTCAGATCATGCCTCCAGAGAGCTGTGAACCCTGTACACACCCCAACAGAACGCTGAGACGTGGCAGAGGAGCACAGGAGACTCTGGAGTCAGTTGACACGCATGGGGATCATCATTACAGCATTTAAGCCCTGCGATATGGATGAAAGTGTCTGGCACGAGTGCTTACAGAGATAGCGTCGGTTAAGCATGTCAAAGACCCGCCCAGGGGTTCCAACCACTATGTGGGGCACATCAGCCTGGAGCTTCTGCACCTCGTTACGGACGTTGGTGCCACCAATGCAGGCATGGCAGGTAGCACCCATGTAGTCTCCAAGGGCAAGAACCACCTTCTGGATCTAAAGTTGGATACAGACAAACCAGACAGATTAAATGTGATGTTTTCTGGAATCCATATGCATTAAGTCaagcttttataaatgttaatcagACACCATTTGATCAATACAATCAGCTGCTTTAGATAAACTTCACAACCTTAATCCACTTACAAGTGAGCAAGGGCTGAGGTCACGTGCTAATGAGCCACAGTAAAATGTGCCCATAGCATGAAACAGTCTTTAGCTCATGGTACTGAGTAGACTGGGATGAATACGGGCTGCCTGCTTTTCCCCTAACAGACATAGGAAGGTGCCACTGAGACACTACCTTGCCCAGTTGATAAGGGGATCTAGATTTCTACAGGCTCTAAGTGCTTGATACTTCCACAGTTCAATAAAAGACTAACTACATGCGTGCAACTGAAAGCACTACAGTGGACTGAGTCTTACCTGTTGAGCAAGCTCTCTGGTTGGGGCCAGGACCATGGCTTGAGTGCCCTTCAGCTCAATATCAATCTGTTGCAGGATGGAGATGGCAAACGTGGCTGTCTTCCCCGTTCCGGACTGAGCCTGAGCGATGACATCATACCCTACACAAATATGTTTGAATTaaacatttccacaaacaaGGTGTCCAAAACAAAATAGTACTTTCATTCTGTGCCCATAGCATGAAACAGTCTTATGCTCACGGTACTGAGTAGACTGGGATGAATATGGGCTGCATTTGCTCTTCCCTTACCAGATATAGAACCACGTGCCAAAGACAGACACTGCCTTGCCCAGTTGATAAGGGTGGCAGAAGAGCAACATGATGGTGCcccattacaaaaaaaaataataagtctTTACAAATACATACCCTTGATACAAGGGAGAATGGCCCTCTGCTGAATGGCAGAAGGTTTCTCAAAACCATAGGCATATATTCCCCTGAGAAGATTCTCACGCAGGTTCATGTCATCAAAACTGTCGACAATCTCCTTCCAGTTGCCCTaacaagacaagaaaaaaagttGGTTAACAGGTTAACACCTTAGCGTCAATCTGAAACTATCACAAACACTTGCAAAGTCTTGGTGTTAGCCCGAGGCATACATGCAGCAGAGATATCACTAGTATGAACAGAAACCTGATCCTATAGGTTTCTGGTAGGGCAGTGGTGGTTAAGGCTTGGGGTTACTGGTCAgtaggttgggggttcaagcccccagcactgccaagctgctgctgtaggGCATTTGAGCAACAAATTGTCCAGGGGGTGCTGTAACATGGCCCTGatcccagcttcctagcaagctgggatatgcaaaatctactgcatttcactggctctgtactcgtactctgcacaAGGACAATACGGCTGAATCGTAATCTTATCTCTATAAGGATGCTAAATCAACAGAGGTGCCACTGCAGAATGGATCAAGACAATTTGCAGCCTATGTTCATTTACATTATCTGCGTTGCCAATCACATGCACTGAACGAATATATAAGTACAAACACACTTAGATTAATTTAACTAATTTTAAATATAGATTAGAACTTACCTCAATGACTCCATCTGGCTCCATGCCCTCGGGGCCATTGTCTCTAGGtctgaacaaaacacacacacaaaaaaaaaaaaaagggttaaatTAATTCAATCACTTCCAAGCATTTCCGACGTTATGATACAGTGCATATAAATCGCTCGAGATTAGTCAGTGGATCGACGAGAGAATGGTAAAGAGGAGACATGAAATGGAGGGAAGCTTCCCCCTGGACAGGAGACACGTCGCAGGGCTCTGGAGGAGGCCTCCATCCAGACCCTCTACTATTACTGGGGGGAGGTTTGGCCTCGCTATGTAAGAAAAGCTAGAAAAGCATCACTGAATAAAATTTATCTTATTCAGTCATTTGATGATCAGAGTAAAATGCACCCAGGCGTACAAACGGAATAAAGTCAGCTAAGATAATCTAATCTAGCAACTAGCTAGAACATGAAGCCAATGCGATCAGACTTGTTTAAATAAACTGCTCttattaaaatgaagaaaacgaAGATCGAGCACAAGTGATGCGGTGTAAATGGTCATTTGTGGAGTAGTTTAAAAAACAGGAGTGCCGGTGTGGGTTAGACTGAGGCTGAGGTCAGGCCCTGGCCTACTCCCGCACTACCGGACACTTCTCTTTTGTCTAACCGGTAGGCCATGTGCTCGAGGCTCCTTCTCGCCAAATATACTTAATCCTGATTAACACGACACAGCGGGATAAAGAATCACACACTAAACCGTCAGAAAAAGTCATATCGTCTTTTTTTCCACTAAATGCTGATAGACAGCGACTGAGAGAAGCGCTCGACAGACAGAGCCAGGAGGCGGCCATGTGGATGAGGCCGAGCCGGCATCTAGCGGAGCTGCTAGCACTCAGCTACAGCCCCGGcaccattttatttcattttaatgtcagAATGAAAGACAGTATATCCACCCACCCAGAACAGTTCGACACTTACGCGTACTGTTCaagataataaattaaaaaaaactactaaagCCAACAAAATGAATGAAGTTACCCCAAACCGCGGCCTTCTTCCACTTACACATGTGAACTAGCTCACTAGCTAACGAGCCTGTTCACGGGCCACGCCGCCACAGAGCCACCATTTCAGTCCGGATTCATACAAGGCAAAAACCGCAAAATCGCTTCGGTTGCTTCTCATGTGTACGTATAATTACACTAAAACTACCGTTTCAATTTTTTACAACCGTAAAACCAACTAAAACGTTTGCTGAAGTCAGCATTTACTCACCTATGTTCATGTTGAGCCGACATTATCACAAAGAAAGGCAGAAGGGCGGAAAAGTGCTAAATACGTGCGCAGTGAAGCCAACCGAAGAATTTTAATTGGAGCAGTCGCCTATCAATCAGAACTGAGGCGGGCCATAGTGACCGCTCATTGGCTGAATTCTACCTCACAAGAGCAAAGAAATCCCGCCCATATCGTGATTCACGTCGAGGCAGCGTGACATCACCGGAAACGTTAACTCAATAATTTCCGACAAATTTGGAATTGGGTAACAATTACAAACCTATAATATGTTGATTCAAACTATAACATACTGATATTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78468 lncRNA upstream 34520 17873399 ~ 17877074 (+) True G66214
TU78431 lncRNA upstream 136285 17772553 ~ 17775309 (+) True G66179
TU78387 lncRNA upstream 164429 17740075 ~ 17747165 (+) True G66159
TU78379 lncRNA upstream 208139 17703234 ~ 17703455 (+) True G66151
TU78365 lncRNA upstream 259884 17649365 ~ 17651710 (+) True G66144
TU78438 lncRNA downstream 54901 17973998 ~ 17975359 (+) True G66186
TU78493 lncRNA downstream 71338 17990435 ~ 17992247 (+) True G66237
TU78533 lncRNA downstream 172491 18091588 ~ 18096583 (+) True G66263
TU78778 lncRNA downstream 192588 18111685 ~ 18111915 (+) True G66426
TU78810 lncRNA downstream 258137 18177234 ~ 18177642 (+) True G66452
XM_026937074.2 mRNA upstream 12101 17894900 ~ 17899493 (+) True mpdu1b
XM_026936049.2 mRNA upstream 17633 17889483 ~ 17893961 (+) True LOC113539925
XM_026936051.2 mRNA upstream 17634 17889527 ~ 17893960 (+) False LOC113539925
XM_026936052.2 mRNA upstream 17634 17889527 ~ 17893960 (+) False LOC113539925
XM_034303838.1 mRNA upstream 85068 17784990 ~ 17826526 (+) True zanl
XM_026936444.2 mRNA downstream 17749 17936846 ~ 17950388 (+) True tnk1
XM_026936445.2 mRNA downstream 47227 17966324 ~ 17968311 (+) True LOC113540162
XM_026935857.2 mRNA downstream 73543 17992640 ~ 17998216 (+) True elp5
XM_026935856.2 mRNA downstream 81061 18000158 ~ 18010962 (+) True ctdnep1b
XM_026937096.2 mRNA downstream 96032 18015129 ~ 18019079 (+) True gabarapb
trnat-agu other upstream 147060 17764461 ~ 17764534 (+) True trnat-agu
TU78354 other upstream 291515 17609704 ~ 17620079 (+) True LOC113539940
XR_003404112.1 other upstream 1149719 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 1149947 16761572 ~ 16761647 (+) True LOC113540744
XR_003404113.1 other upstream 1150256 16761266 ~ 16761338 (+) True LOC113540743
XR_003403977.2 other downstream 81061 18000158 ~ 18010962 (+) False ctdnep1b
XR_004577948.1 other downstream 194347 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 278215 18197312 ~ 18208564 (+) True G66492
TU79253 other downstream 937359 18856456 ~ 18858652 (+) True G66864
trnah-gug_4 other downstream 1909214 19828311 ~ 19828382 (+) True trnah-gug_4

Expression Profile