Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU78533 |
| length | 1263 |
| lncRNA type | inter_gene |
| GC content | 0.43 |
| exon number | 2 |
| gene id | G66263 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 18091588 ~ 18096583 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU78493 | lncRNA | upstream | 99341 | 17990435 ~ 17992247 (+) | True | G66237 |
| TU78438 | lncRNA | upstream | 116229 | 17973998 ~ 17975359 (+) | True | G66186 |
| TU78405 | lncRNA | upstream | 172491 | 17904611 ~ 17919097 (+) | True | G66169 |
| TU78403 | lncRNA | upstream | 172491 | 17911594 ~ 17919097 (+) | False | G66169 |
| TU78468 | lncRNA | upstream | 214514 | 17873399 ~ 17877074 (+) | True | G66214 |
| TU78778 | lncRNA | downstream | 15102 | 18111685 ~ 18111915 (+) | True | G66426 |
| TU78810 | lncRNA | downstream | 80651 | 18177234 ~ 18177642 (+) | True | G66452 |
| TU79006 | lncRNA | downstream | 285373 | 18381956 ~ 18382162 (+) | True | G66637 |
| TU79026 | lncRNA | downstream | 333979 | 18430562 ~ 18431136 (+) | True | G66654 |
| TU79045 | lncRNA | downstream | 394789 | 18491372 ~ 18491581 (+) | True | G66670 |
| XM_026936697.2 | mRNA | upstream | 9158 | 18049289 ~ 18082430 (+) | True | rap1gds1 |
| XM_026936698.2 | mRNA | upstream | 9158 | 18049289 ~ 18082430 (+) | False | rap1gds1 |
| XM_026936699.2 | mRNA | upstream | 9158 | 18049290 ~ 18082430 (+) | False | rap1gds1 |
| XM_026936730.2 | mRNA | upstream | 63537 | 18020211 ~ 18028051 (+) | False | spata6l |
| XM_026936729.2 | mRNA | upstream | 63537 | 18020212 ~ 18028051 (+) | False | spata6l |
| XM_034303317.1 | mRNA | downstream | 16850 | 18113433 ~ 18143631 (+) | False | frem1a |
| XM_026935846.2 | mRNA | downstream | 16861 | 18113444 ~ 18143631 (+) | True | frem1a |
| XM_034303316.1 | mRNA | downstream | 16890 | 18113473 ~ 18143631 (+) | False | frem1a |
| XM_034304071.1 | mRNA | downstream | 125041 | 18221624 ~ 18243797 (+) | True | sec24d |
| XM_026936118.2 | mRNA | downstream | 329775 | 18426358 ~ 18430359 (+) | True | gba3 |
| XR_003403977.2 | other | upstream | 80626 | 18000158 ~ 18010962 (+) | False | ctdnep1b |
| trnat-agu | other | upstream | 327054 | 17764461 ~ 17764534 (+) | True | trnat-agu |
| TU78354 | other | upstream | 471509 | 17609704 ~ 17620079 (+) | True | LOC113539940 |
| XR_003404112.1 | other | upstream | 1329713 | 16761804 ~ 16761875 (+) | True | LOC113540742 |
| XR_003404114.1 | other | upstream | 1329941 | 16761572 ~ 16761647 (+) | True | LOC113540744 |
| XR_004577948.1 | other | downstream | 16861 | 18113444 ~ 18130505 (+) | False | frem1a |
| TU78855 | other | downstream | 100729 | 18197312 ~ 18208564 (+) | True | G66492 |
| TU79253 | other | downstream | 759873 | 18856456 ~ 18858652 (+) | True | G66864 |
| trnah-gug_4 | other | downstream | 1731728 | 19828311 ~ 19828382 (+) | True | trnah-gug_4 |
| trnah-gug_5 | other | downstream | 1732236 | 19828819 ~ 19828890 (+) | True | trnah-gug_5 |
